Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

73560468 .. 73576471

Gene Structure 16004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCTATGCACGCCCAAACTAGGTACTGCAACGCCTGGCCTGAGTGGTCGACTGCCTTCTAGCCTTCAACCTTACTATAGCAGCTGCCCTGAAGAGCCTACGGCTATGCATGCAGAGAATGGGAGCGACGTGATGTACTACTCACTGCCCAAGTTCACCATGAGCGACCTAGAAGCTGCCACGGAGGACTTCTTACAGGAGAACATTGTTTCGGCAAATGGAGAGAAATCTCCCAATGTGGTGTACAGAGGCAAGCTCAAAGACAGCCGTTGGGTGGTTCATGGCTGTCAAGCGTTTCACGAGGCTACAGCTGTCGGGAGGCTAAACAATGAGCTTCTGGTGAATTTGATTGGGTGTTGCTGTCATGGAAATGAGAGATTGCTTGTGGCAGAGTTCATGCCTAATCAAACTCTCTCTAAGCATCTGTTCCATATCCCACCCCATCCCCATGAAAGGGGCTACCCGGCTATGAGGTTGCGAGTAGCTCTGCATCTGGCACAAGCTTTGGTGTATTGCAGCAGCAAAGGACGGCCATTGTACTATGATCCTAATTCTTCTAGAGTCCTGTTTGATCAGTCTGCGTTTGACAGAATGGAAACCCCACTGTCCTGCTTTGGCCTTGTGAAGAATAGCAGAGATGGCAAGAGCTATAGCTCCACCCTGGCTTACCCTCCACAATACACACGGACAGACTCTTTCCCCGTGCTCGAAAAACTGAGAGCTAGTGGTAGAGGACTAGAGGTAGTTAGCCATCGTGCTCGCAAAGAAGAGTGGGATTGGCTGCTCTTGAGTCTTGAGAGTGAAGAGTGGTATTGGCTGCAGAGTGCGAAGGTTCCCGTATTGCAGGTTCCATCACACGTTTTGATGGATGTTCCACATGGGAATGTGCCTCCGAAACAGTTGTCACCTCCAGGTGAAGCTTGCTCGAAATTGGATCTTACTGCAATTCATGAAATATTGGAGATGACTGAATACAAGGCTGACGTCAAGAAGGAATTCTTCAACTTTAAGTCTCGTCGATTCATGTTTATTATCACACTTTCTATGGTGAATGTTGATTATTGCACTGCCCTTGCAGCCTTCTTTCGATTTGTGAACAGATGCAATGAAGAAGGCACTAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

376

Amino Acids

42.43

Weight (kDa)

6.89

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	987
Acc36I	ACCTGC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	49
AclWI	GGATC	2 cut(s)	539, 942
AcoI	YGGCCR	1 cut(s)	530
AcsI	RAATTY	3 cut(s)	343, 995, 1121
AcuI	CTGAAG	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	984
AfaI	GTAC	4 cut(s)	25, 137, 245, 539
AfiI	CCNNNNNNNGG	4 cut(s)	20, 274, 453, 454
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	2 cut(s)	68, 1003
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	3 cut(s)	34, 660, 910
Alw21I	GWGCWC	2 cut(s)	708, 760
Alw26I	GTCTC	1 cut(s)	1017
AlwI	GGATC	2 cut(s)	539, 942
AoxI	GGCC	3 cut(s)	37, 530, 616
ApeKI	GCWGC	8 cut(s)	81, 84, 176, 516, 519, 781, 817, 1076
ApoI	RAATTY	3 cut(s)	343, 995, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	1 cut(s)	995
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	5 cut(s)	148, 352, 897, 926, 1060
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	708, 760
BbvI	GCAGC	8 cut(s)	71, 93, 163, 528, 531, 768, 804, 1088
BccI	CCATC	5 cut(s)	450, 632, 759, 859, 859
BceAI	ACGGC	3 cut(s)	117, 252, 545
BciT130I	CCWGG	3 cut(s)	36, 662, 912
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	1017
BfaI	CTAG	7 cut(s)	20, 60, 170, 558, 723, 737, 1126
BfmI	CTRYAG	4 cut(s)	76, 306, 649, 818
BfuAI	ACCTGC	1 cut(s)	835
BisI	GCNGC	8 cut(s)	82, 85, 177, 517, 520, 782, 818, 1077
BlsI	GCNGC	8 cut(s)	83, 86, 178, 518, 521, 783, 819, 1078
Bme1390I	CCNGG	4 cut(s)	36, 464, 662, 912
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	834, 849
BmrFI	CCNGG	4 cut(s)	36, 464, 662, 912
BmsI	GCATC	3 cut(s)	430, 499, 1091
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	808, 815
BpuMI	CCSGG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	180, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 274, 453, 454
Bse3DI	GCAATG	1 cut(s)	1111
BseBI	CCWGG	3 cut(s)	36, 662, 912
BseDI	CCNNGG	2 cut(s)	180, 660
BseGI	GGATG	2 cut(s)	442, 874
BseLI	CCNNNNNNNGG	4 cut(s)	20, 274, 453, 454
BseMI	GCAATG	1 cut(s)	1111
BseMII	CTCAG	2 cut(s)	32, 707
BseXI	GCAGC	8 cut(s)	71, 93, 163, 528, 531, 768, 804, 1088
BshFI	GGCC	3 cut(s)	39, 532, 618
BsiHKAI	GWGCWC	2 cut(s)	708, 760
BsiSI	CCGG	1 cut(s)	464
BslI	CCNNNNNNNGG	4 cut(s)	20, 274, 453, 454
BsmAI	GTCTC	1 cut(s)	1017
BsnI	GGCC	3 cut(s)	39, 532, 618
Bsp1286I	GDGCHC	2 cut(s)	708, 760
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	544, 571, 934
BspANI	GGCC	3 cut(s)	39, 532, 618
BspCNI	CTCAG	2 cut(s)	33, 708
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	834, 849
BspMAI	CTGCAG	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	835
BspPI	GGATC	2 cut(s)	539, 942
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	1111
BsrGI	TGTACA	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	180, 660
BssMI	GATC	3 cut(s)	544, 571, 934
BssNI	GRCGYC	1 cut(s)	984
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	3 cut(s)	36, 662, 912
Bst4CI	ACNGT	2 cut(s)	606, 900
Bst6I	CTCTTC	3 cut(s)	87, 762, 798
BstACI	GRCGYC	1 cut(s)	984
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	5 cut(s)	11, 111, 254, 760, 922
BstDEI	CTNAG	3 cut(s)	41, 417, 716
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	442, 874
BstKTI	GATC	3 cut(s)	547, 574, 937
BstMAI	GTCTC	1 cut(s)	1017
BstMBI	GATC	3 cut(s)	544, 571, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 110, 639, 1076
BstNI	CCWGG	3 cut(s)	36, 662, 912
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	4 cut(s)	34, 462, 660, 910
BstSFI	CTRYAG	4 cut(s)	76, 306, 649, 818
BstV1I	GCAGC	8 cut(s)	71, 93, 163, 528, 531, 768, 804, 1088
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BsuRI	GGCC	3 cut(s)	39, 532, 618
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	442, 874
BtsI	GCAGTG	2 cut(s)	143, 1065
BtsIMutI	CAGTG	3 cut(s)	143, 602, 1065
BveI	ACCTGC	1 cut(s)	835
Cac8I	GCNNGC	5 cut(s)	11, 111, 254, 760, 922
CciI	TCATGA	1 cut(s)	949
Csp6I	GTAC	4 cut(s)	24, 136, 244, 538
CviAII	CATG	9 cut(s)	110, 160, 281, 365, 397, 449, 878, 950, 1024
CviQI	GTAC	4 cut(s)	24, 136, 244, 538
DdeI	CTNAG	3 cut(s)	41, 417, 716
DpnI	GATC	3 cut(s)	546, 573, 936
DpnII	GATC	3 cut(s)	544, 571, 934
EaeI	YGGCCR	1 cut(s)	530
Eam1104I	CTCTTC	3 cut(s)	87, 762, 798
EarI	CTCTTC	3 cut(s)	87, 762, 798
Eco57I	CTGAAG	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	3 cut(s)	34, 660, 910
EcoT22I	ATGCAT	1 cut(s)	111
FaeI	CATG	9 cut(s)	113, 163, 284, 368, 400, 452, 881, 953, 1027
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FatI	CATG	9 cut(s)	109, 159, 280, 364, 396, 448, 877, 949, 1023
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	8 cut(s)	82, 85, 177, 517, 520, 782, 818, 1077
FokI	GGATG	2 cut(s)	429, 881
Fsp4HI	GCNGC	8 cut(s)	82, 85, 177, 517, 520, 782, 818, 1077
FspBI	CTAG	7 cut(s)	20, 60, 170, 558, 723, 737, 1126
GluI	GCNGC	8 cut(s)	82, 85, 177, 517, 520, 782, 818, 1077
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	3 cut(s)	39, 532, 618
HapII	CCGG	1 cut(s)	464
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	9 cut(s)	113, 163, 284, 368, 400, 452, 881, 953, 1027
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HindIII	AAGCTT	2 cut(s)	501, 918
HinfI	GANTC	4 cut(s)	561, 692, 790, 1020
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	5 cut(s)	148, 352, 897, 926, 1060
Hpy166II	GTNNAC	4 cut(s)	50, 156, 244, 1096
Hpy188I	TCNGA	1 cut(s)	894
Hpy188III	TCNNGA	7 cut(s)	299, 316, 558, 787, 794, 950, 988
Hpy8I	GTNNAC	4 cut(s)	50, 156, 244, 1096
Hpy99I	CGWCG	2 cut(s)	131, 1020
HpyAV	CCTTC	6 cut(s)	66, 74, 823, 985, 1090, 1106
HpyCH4III	ACNGT	2 cut(s)	606, 900
HpyCH4IV	ACGT	3 cut(s)	129, 858, 984
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 110, 639, 1076
HpyF3I	CTNAG	3 cut(s)	41, 417, 716
HpySE526I	ACGT	3 cut(s)	129, 858, 984
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	9 cut(s)	113, 163, 284, 368, 400, 452, 881, 953, 1027
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	544, 571, 934
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	123, 659
Lsp1109I	GCAGC	8 cut(s)	71, 93, 163, 528, 531, 768, 804, 1088
LweI	GCATC	3 cut(s)	430, 499, 1091
MaeI	CTAG	7 cut(s)	20, 60, 170, 558, 723, 737, 1126
MaeII	ACGT	3 cut(s)	129, 858, 984
MaeIII	GTNAC	1 cut(s)	903
MalI	GATC	3 cut(s)	546, 573, 936
MboI	GATC	3 cut(s)	544, 571, 934
MboII	GAAGA	7 cut(s)	104, 546, 637, 779, 815, 991, 1121
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	708, 760
MluCI	AATT	6 cut(s)	343, 550, 929, 945, 995, 1121
MlyI	GAGTC	3 cut(s)	570, 686, 799
Mph1103I	ATGCAT	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	995
MseI	TTAA	1 cut(s)	1008
MslI	CAYNNNNRTG	3 cut(s)	369, 447, 882
MspA1I	CMGCKG	2 cut(s)	84, 311
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	4 cut(s)	36, 464, 662, 912
MvaI	CCWGG	3 cut(s)	36, 662, 912
MwoI	GCNNNNNNNGC	4 cut(s)	10, 110, 639, 1076
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	3 cut(s)	544, 571, 934
NlaIII	CATG	9 cut(s)	113, 163, 284, 368, 400, 452, 881, 953, 1027
NlaIV	GGNNCC	2 cut(s)	834, 849
NmuCI	GTSAC	1 cut(s)	903
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PagI	TCATGA	1 cut(s)	949
PciSI	GCTCTTC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	995
PfeI	GAWTC	1 cut(s)	1020
PkrI	GCNGC	8 cut(s)	83, 86, 178, 518, 521, 783, 819, 1078
PleI	GAGTC	3 cut(s)	569, 686, 798
PpsI	GAGTC	3 cut(s)	569, 686, 798
Psp6I	CCWGG	3 cut(s)	34, 660, 910
PspGI	CCWGG	3 cut(s)	34, 660, 910
PspN4I	GGNNCC	2 cut(s)	834, 849
PsrI	GAACNNNNNNTAC	2 cut(s)	831, 863
PstI	CTGCAG	1 cut(s)	822
PsuI	RGATCY	1 cut(s)	934
PvuII	CAGCTG	2 cut(s)	84, 311
RsaI	GTAC	4 cut(s)	25, 137, 245, 539
RsaNI	GTAC	4 cut(s)	24, 136, 244, 538
RseI	CAYNNNNRTG	3 cut(s)	369, 447, 882
SalI	GTCGAC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	1008
SatI	GCNGC	8 cut(s)	82, 85, 177, 517, 520, 782, 818, 1077
Sau3AI	GATC	3 cut(s)	544, 571, 934
SchI	GAGTC	3 cut(s)	570, 686, 799
ScrFI	CCNGG	4 cut(s)	36, 464, 662, 912
SduI	GDGCHC	2 cut(s)	708, 760
SfaNI	GCATC	3 cut(s)	430, 499, 1091
SfcI	CTRYAG	4 cut(s)	76, 306, 649, 818
SmiMI	CAYNNNNRTG	3 cut(s)	369, 447, 882
SmlI	CTYRAG	2 cut(s)	787, 794
SmoI	CTYRAG	2 cut(s)	787, 794
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	6 cut(s)	343, 550, 929, 945, 995, 1121
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	7 cut(s)	20, 60, 170, 558, 723, 737, 1126
StyD4I	CCNGG	4 cut(s)	34, 462, 660, 910
TaaI	ACNGT	2 cut(s)	606, 900
TaiI	ACGT	3 cut(s)	132, 861, 987
TaqI	TCGA	5 cut(s)	49, 708, 926, 1018, 1087
TasI	AATT	6 cut(s)	343, 550, 929, 945, 995, 1121
TatI	WGTACW	3 cut(s)	135, 243, 537
TfiI	GAWTC	1 cut(s)	1020
Tru1I	TTAA	1 cut(s)	1008
Tru9I	TTAA	1 cut(s)	1008
TscAI	CASTG	3 cut(s)	150, 609, 1072
TseFI	GTSAC	1 cut(s)	903
TseI	GCWGC	8 cut(s)	81, 84, 176, 516, 519, 781, 817, 1076
Tsp45I	GTSAC	1 cut(s)	903
TspDTI	ATGAA	7 cut(s)	269, 385, 465, 938, 966, 1012, 1122
TspGWI	ACGGA	2 cut(s)	197, 700
TspRI	CASTG	3 cut(s)	150, 609, 1072
XapI	RAATTY	3 cut(s)	343, 995, 1121
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	995
XspI	CTAG	7 cut(s)	20, 60, 170, 558, 723, 737, 1126
ZraI	GACGTC	1 cut(s)	985
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.