RLG00000036169

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Reverse (-)
76842684 .. 76843590
907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036169

Sequence Viewer

Length: 576 bp
ATGTGCAAAAGTTTAACTAGTGTCTTCCTTCAAGATAACCATTTCACAGGCAATGTATCTGAAGTATTTGGTGCCTATCCAAATCTTAAAAAAGTAGACCTTAGCCAAAACAGCTTCTACGGCGAAATCTCACCCATGTGGGGACTTTGTCCTCAGTTAGCAACCCTACGAATTGTAGGAAACAACCTGACTGGCAGCATCCCACCTGAGATAGGCAATGCAGCCCAAATTCAAGAACTCAATCTTTCTTCAAATGGTTTAGTTGGGGTGATTCCAAATGAGATTGGGAGATTGACTTCTCTGCAGCGTCTGAATTTGGATGGTAATCAACTTTCGGGTCACATACCTTCTGAATTTGATTCATTGAAGGATCTTGAATATCTTGACCTGTCAACCAACAAATTCAGTGGGTCAATTCCAAGCATTTTAGAAGAGAAGACCAGGCTGGAAGCTGTGAAGTTTAGTAGTTACAACAAGAGCAAACCGTTTTCACGGAAGCTGGAGTACGGACGGAAAGCTACAGTACCATCTCCCCCGGAGCCACTTTGTTGTGCGCAGGGAAATCTGAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

6.73

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 51 - 111 7.5e-09 Leucine rich repeat
LRR_14 PF23598 70 - 157 2.4e-07 Leucine-rich repeat region
LRR_8 PF13855 76 - 135 1.3e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 96
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 4 cut(s) 228, 313, 353, 401
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 506, 525
AfiI CCNNNNNNNGG 2 cut(s) 140, 212
AgsI TTSAA 5 cut(s) 32, 233, 252, 367, 377
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 440
AleI CACNNNNGTG 1 cut(s) 136
AluBI AGCT 4 cut(s) 114, 452, 499, 518
AluI AGCT 4 cut(s) 114, 452, 499, 518
AlwI GGATC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 195, 221, 304
ApoI RAATTY 4 cut(s) 228, 313, 353, 401
AspLEI GCGC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 2 cut(s) 123, 280
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 488, 520
BbsI GAAGAC 2 cut(s) 16, 443
BbvI GCAGC 3 cut(s) 207, 233, 316
BccI CCATC 2 cut(s) 314, 535
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 442
BcnI CCSGG 1 cut(s) 536
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 302, 519
BisI GCNGC 3 cut(s) 196, 222, 305
BlsI GCNGC 3 cut(s) 197, 223, 306
Bme1390I CCNGG 2 cut(s) 442, 536
BmiI GGNNCC 2 cut(s) 73, 540
BmrFI CCNGG 2 cut(s) 442, 536
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 2 cut(s) 16, 443
BpmI CTGGAG 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 212
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 2 cut(s) 58, 223
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 198, 325
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 140, 212
BseMI GCAATG 2 cut(s) 58, 223
BseMII CTCAG 2 cut(s) 167, 198
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 207, 233, 316
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 140, 212
BsmFI GGGAC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 370
BspCNI CTCAG 2 cut(s) 166, 199
BspLI GGNNCC 2 cut(s) 73, 540
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 58, 223
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 442
Bst4CI ACNGT 2 cut(s) 486, 523
Bst6I CTCTTC 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 101, 153, 207
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 198, 325
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 111, 120
BstNI CCWGG 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 440, 534
BstSFI CTRYAG 2 cut(s) 302, 519
BstV1I GCAGC 3 cut(s) 207, 233, 316
BstV2I GAAGAC 2 cut(s) 16, 443
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BtsCI GGATG 2 cut(s) 198, 325
BtsIMutI CAGTG 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 556
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 505, 524
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 1 cut(s) 136
CviJI RGCY 8 cut(s) 105, 114, 224, 445, 452, 499, 518, 541
CviKI_1 RGCY 8 cut(s) 105, 114, 224, 445, 452, 499, 518, 541
CviQI GTAC 2 cut(s) 505, 524
DdeI CTNAG 3 cut(s) 101, 153, 207
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 440
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 137, 344
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 156
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 196, 222, 305
FokI GGATG 2 cut(s) 185, 332
Fsp4HI GCNGC 3 cut(s) 196, 222, 305
FspBI CTAG 1 cut(s) 18
FspI TGCGCA 1 cut(s) 555
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 196, 222, 305
GsuI CTGGAG 1 cut(s) 521
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 556
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 2 cut(s) 271, 359
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 123, 280
Hpy166II GTNNAC 2 cut(s) 97, 393
Hpy188I TCNGA 4 cut(s) 61, 312, 352, 567
Hpy188III TCNNGA 4 cut(s) 32, 233, 374, 383
Hpy8I GTNNAC 2 cut(s) 97, 393
HpyAV CCTTC 3 cut(s) 38, 357, 361
HpyCH4III ACNGT 2 cut(s) 486, 523
HpyCH4V TGCA 3 cut(s) 6, 221, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 120
HpyF3I CTNAG 3 cut(s) 101, 153, 207
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 554
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 3 cut(s) 207, 233, 316
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 338, 467
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 4 cut(s) 16, 240, 443, 448
MflI RGATCY 1 cut(s) 370
MluCI AATT 6 cut(s) 171, 228, 313, 353, 401, 414
MnlI CCTC 1 cut(s) 162
MseI TTAA 3 cut(s) 14, 87, 574
MslI CAYNNNNRTG 1 cut(s) 136
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 442, 536
MvaI CCWGG 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 111, 120
NciI CCSGG 1 cut(s) 536
NdeII GATC 1 cut(s) 370
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 73, 540
NmuCI GTSAC 1 cut(s) 338
NsbI TGCGCA 1 cut(s) 555
OliI CACNNNNGTG 1 cut(s) 136
PfeI GAWTC 2 cut(s) 271, 359
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 3 cut(s) 197, 223, 306
Psp6I CCWGG 1 cut(s) 440
PspGI CCWGG 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 73, 540
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 2 cut(s) 506, 525
RsaNI GTAC 2 cut(s) 505, 524
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 14, 87, 574
SatI GCNGC 3 cut(s) 196, 222, 305
Sau3AI GATC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 442, 536
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 2 cut(s) 302, 519
SmiMI CAYNNNNRTG 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 6 cut(s) 171, 228, 313, 353, 401, 414
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 440, 534
TaaI ACNGT 2 cut(s) 486, 523
TasI AATT 6 cut(s) 171, 228, 313, 353, 401, 414
TfiI GAWTC 2 cut(s) 271, 359
Tru1I TTAA 3 cut(s) 14, 87, 574
Tru9I TTAA 3 cut(s) 14, 87, 574
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 195, 221, 304
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 3 cut(s) 508, 522, 526
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 4 cut(s) 228, 313, 353, 401
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.