RLG00000036462

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Reverse (-)
80907238 .. 80907693
456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036462

Sequence Viewer

Length: 378 bp
ATGGCCAGACTATGGTGTCTGCAAGCCAAAGGTTTGAGCTTGGGTTCTTCAGCCCAGGAAGCTGAGCTTCTGGGTATTCCTGGTTCTTCTTCAGCAAGTTTAACTCTAGGCTCTTCGGGGTTTTCAATTTCCACTAATGAGTCTTTGATTGTGTGGTCTGTGAATGTCTCTCCGGTCTTAAATAGTCCCATATTGCAGCTCTTGGACAATGGCAATCTGATCTTGAGAGATGAGAGTGGTGGAGATTCAGAGGGGGTGTGTTTTACCCGGGATATGAACTCATGGTTGTCCTCCAGTGACCCCTCTACGGGAGAATTTACTTTCACTGTGGACCGGCCTGATCAGGCGCCTCTGTTGGCGTCCACAATGGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

126

Amino Acids

13.14

Weight (kDa)

4.05

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 2 cut(s) 33, 75
AcyI GRCGYC 2 cut(s) 347, 359
AfiI CCNNNNNNNGG 3 cut(s) 12, 307, 308
AgsI TTSAA 1 cut(s) 126
AjnI CCWGG 2 cut(s) 54, 79
AluBI AGCT 4 cut(s) 39, 62, 67, 199
AluI AGCT 4 cut(s) 39, 62, 67, 199
Alw26I GTCTC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 3, 335
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 331
AsuC2I CCSGG 2 cut(s) 268, 269
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 56, 81
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 2 cut(s) 268, 269
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 4 cut(s) 56, 81, 268, 269
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 4 cut(s) 56, 81, 268, 269
BpmI CTGGAG 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 2 cut(s) 268, 269
BsaHI GRCGYC 2 cut(s) 347, 359
BsaJI CCNNGG 2 cut(s) 54, 267
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 307, 308
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 56, 81
BseDI CCNNGG 2 cut(s) 54, 267
BseLI CCNNNNNNNGG 3 cut(s) 12, 307, 308
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 2 cut(s) 5, 337
BshNI GGYRCC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 3 cut(s) 173, 268, 334
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 3 cut(s) 12, 307, 308
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 2 cut(s) 5, 337
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 2 cut(s) 219, 340
Bsp1720I GCTNAGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 5, 337
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 54, 267
BssMI GATC 2 cut(s) 219, 340
BssNI GRCGYC 2 cut(s) 347, 359
Bst2UI CCWGG 2 cut(s) 56, 81
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 2 cut(s) 347, 359
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 2 cut(s) 222, 343
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 219, 340
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 2 cut(s) 56, 81
BstSCI CCNGG 4 cut(s) 54, 79, 266, 267
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 5, 337
BtsIMutI CAGTG 2 cut(s) 301, 324
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 331
Cfr9I CCCGGG 1 cut(s) 267
CseI GACGC 1 cut(s) 348
CviAII CATG 1 cut(s) 282
CviJI RGCY 9 cut(s) 5, 26, 39, 53, 62, 67, 111, 199, 337
CviKI_1 RGCY 9 cut(s) 5, 26, 39, 53, 62, 67, 111, 199, 337
DdeI CTNAG 1 cut(s) 63
DinI GGCGCC 1 cut(s) 348
DpnI GATC 2 cut(s) 221, 342
DpnII GATC 2 cut(s) 219, 340
DrdI GACNNNNNNGTC 1 cut(s) 15
DseDI GACNNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 33, 75
Eco88I CYCGRG 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 54, 79
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
FaeI CATG 1 cut(s) 285
FaiI YATR 4 cut(s) 13, 191, 275, 283
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 2 cut(s) 5, 337
HapII CCGG 3 cut(s) 173, 268, 334
HgaI GACGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 2 cut(s) 347, 359
Hin1II CATG 1 cut(s) 285
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 2 cut(s) 140, 245
HpaII CCGG 3 cut(s) 173, 268, 334
Hpy166II GTNNAC 2 cut(s) 331, 363
Hpy188I TCNGA 2 cut(s) 219, 250
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 331, 363
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 22, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 63
Hsp92I GRCGYC 2 cut(s) 347, 359
Hsp92II CATG 1 cut(s) 285
HspAI GCGC 1 cut(s) 347
KasI GGCGCC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 219, 340
LguI GCTCTTC 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 221, 342
MboI GATC 2 cut(s) 219, 340
MboII GAAGA 4 cut(s) 39, 78, 81, 105
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 126, 314
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 4 cut(s) 244, 301, 313, 360
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 101, 179
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 173, 268, 334
MspR9I CCNGG 4 cut(s) 56, 81, 268, 269
MvaI CCWGG 2 cut(s) 56, 81
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 347
NciI CCSGG 2 cut(s) 268, 269
NdeII GATC 2 cut(s) 219, 340
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 54, 79
PspGI CCWGG 2 cut(s) 54, 79
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 331
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 101, 179
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 219, 340
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 56, 81, 268, 269
SetI ASST 5 cut(s) 34, 41, 64, 69, 201
SfoI GGCGCC 1 cut(s) 348
SinI GGWCC 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 2 cut(s) 126, 314
SspDI GGCGCC 1 cut(s) 346
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 4 cut(s) 54, 79, 266, 267
TaaI ACNGT 1 cut(s) 328
TasI AATT 2 cut(s) 126, 314
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 2 cut(s) 101, 179
Tru9I TTAA 2 cut(s) 101, 179
TscAI CASTG 2 cut(s) 301, 331
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 290
TspMI CCCGGG 1 cut(s) 267
TspRI CASTG 2 cut(s) 301, 331
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 314
XmaI CCCGGG 1 cut(s) 267
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.