RLG00000036571

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Forward (+)
82060728 .. 82062457
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036571

Sequence Viewer

Length: 435 bp
ATGGGATTACCAGAACTCGAGAAAATCGCTGCAACATCTGAGGAGAAGATATATGCTGTTGCCTCAAACCAGGCTGATTATCTGCGTAAAATAAATAAAGCGAAAAGGTATTTGCTGGATTGGCAAAAGCGTTCCAACATTATCTGTGGGATTGCTCAAGGACTTCTCTATCTTCACCAGGATTCGAGATTCAGAATCATCCAGAGGGAACTCAAGGCAAGCAACATTCTACTTGATGGAGAATTGCAAGAATATTTGGTCAGGATCAGACAGAAGCCAATACAAAAAAAGCAGTGGGAACATAGTGAGTACCATAATAAGCATACAATTTTTCTAAGTAATGCTAAGACCTTACATACTAATTTGACTTTCTTGATGATCGGCAGTGGCTATGTGTCTCCTGAACACTCAATGGATGATCTCTTCATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

145

Amino Acids

16.86

Weight (kDa)

9.3

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 2 - 33 1.5e-06 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 272
AfaI GTAC 1 cut(s) 311
AjnI CCWGG 2 cut(s) 69, 177
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 2 cut(s) 71, 179
BcoDI GTCTC 1 cut(s) 402
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 71, 179
BmeT110I CYCGRG 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 71, 179
BpuEI CTTGAG 2 cut(s) 141, 197
BseBI CCWGG 2 cut(s) 71, 179
BseGI GGATG 2 cut(s) 198, 421
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 17
Bsp143I GATC 3 cut(s) 264, 378, 418
BspCNI CTCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 272
BssMI GATC 3 cut(s) 264, 378, 418
Bst2UI CCWGG 2 cut(s) 71, 179
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 39, 335, 345
BstF5I GGATG 2 cut(s) 198, 421
BstKTI GATC 3 cut(s) 267, 381, 421
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 3 cut(s) 264, 378, 418
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 71, 179
BstSCI CCNGG 2 cut(s) 69, 177
BstV1I GCAGC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 198, 421
BtsI GCAGTG 2 cut(s) 299, 391
BtsIMutI CAGTG 2 cut(s) 299, 391
Cac8I GCNNGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 310
CviJI RGCY 3 cut(s) 74, 277, 390
CviKI_1 RGCY 3 cut(s) 74, 277, 390
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 39, 335, 345
DpnI GATC 3 cut(s) 266, 380, 420
DpnII GATC 3 cut(s) 264, 378, 418
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 69, 177
FaiI YATR 7 cut(s) 52, 54, 303, 315, 324, 357, 393
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 185, 428
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HinfI GANTC 3 cut(s) 182, 189, 195
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 3 cut(s) 40, 194, 269
Hpy188III TCNNGA 6 cut(s) 19, 186, 202, 262, 373, 401
HpyCH4V TGCA 2 cut(s) 32, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 39, 335, 345
Kzo9I GATC 3 cut(s) 264, 378, 418
LpnPI CCDG 9 cut(s) 24, 56, 83, 101, 164, 191, 215, 247, 414
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 3 cut(s) 266, 380, 420
MboI GATC 3 cut(s) 264, 378, 418
MboII GAAGA 3 cut(s) 58, 164, 415
MluCI AATT 3 cut(s) 242, 327, 361
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 34, 73, 198
MspR9I CCNGG 2 cut(s) 71, 179
MvaI CCWGG 2 cut(s) 71, 179
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 3 cut(s) 264, 378, 418
PaeR7I CTCGAG 1 cut(s) 17
PfeI GAWTC 3 cut(s) 182, 189, 195
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 69, 177
PspGI CCWGG 2 cut(s) 69, 177
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 264, 378, 418
ScrFI CCNGG 2 cut(s) 71, 179
SetI ASST 2 cut(s) 110, 353
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 3 cut(s) 17, 156, 212
SmoI CTYRAG 3 cut(s) 17, 156, 212
Sse9I AATT 3 cut(s) 242, 327, 361
SspI AATATT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 69, 177
TaqI TCGA 2 cut(s) 18, 185
TasI AATT 3 cut(s) 242, 327, 361
TfiI GAWTC 3 cut(s) 182, 189, 195
TscAI CASTG 2 cut(s) 299, 391
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 2 cut(s) 299, 391
XhoI CTCGAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.