Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

83660448 .. 83661174

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTCCCTGCTGAAGGCCATATGGTAACAAAGTTGCATTCATACCTTCGGGAGCCAACTGCAAGTCCAACTTTCCAAGTATTTCAACATAGAGAAGTTAACTCTTCTTTTATCAAAATAATTGCCTACTTTGGATCAGCCAAGCTTTTGAAGACGGATCAAACTCGAACCATCCCTGCAATCAGGAGAACAAAAGGTTGTGTGTCCCCTGAATGGTTCAAAGCCTTGCCTATCTCTGTCAAGATGGATGTTTACAGCTATGGAATTTTGTTTTTAGTGATTATCTGCTGCAGGAAGGACTTTGAAGCTGAGGTAAATGATGAAAATGAAATGATACTGTCTGATTGGGCCTATAGTTGTGCCGGCCATTTGCTATTGGATGATGATGATGAGGCAATGAATGACATCAAGAAGACTGAGAAGTCTATGATGACTGTATTGTGGTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

151

Amino Acids

17.24

Weight (kDa)

5.79

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	37 - 148	8.4e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	142, 165
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	14, 213
AgsI	TTSAA	4 cut(s)	86, 151, 220, 305
AluBI	AGCT	3 cut(s)	145, 258, 308
AluI	AGCT	3 cut(s)	145, 258, 308
AlwI	GGATC	2 cut(s)	142, 165
AoxI	GGCC	3 cut(s)	16, 348, 364
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	348
BbsI	GAAGAC	2 cut(s)	158, 419
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	179, 238
BfmI	CTRYAG	2 cut(s)	289, 352
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	158, 419
Bpu10I	CCTNAGC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 213
Bse118I	RCCGGY	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	171, 253, 385
BseLI	CCNNNNNNNGG	2 cut(s)	14, 213
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	300, 408
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	3 cut(s)	18, 350, 366
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	14, 213
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	18, 350, 366
Bsp143I	GATC	2 cut(s)	134, 157
BspANI	GGCC	3 cut(s)	18, 350, 366
BspCNI	CTCAG	2 cut(s)	301, 409
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	2 cut(s)	142, 165
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssMI	GATC	2 cut(s)	134, 157
Bst4CI	ACNGT	2 cut(s)	339, 436
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	309, 417
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	171, 253, 385
BstKTI	GATC	2 cut(s)	137, 160
BstMBI	GATC	2 cut(s)	134, 157
BstSFI	CTRYAG	2 cut(s)	289, 352
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	2 cut(s)	158, 419
BsuRI	GGCC	3 cut(s)	18, 350, 366
BtsCI	GGATG	3 cut(s)	171, 253, 385
Cac8I	GCNNGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	348
CviJI	RGCY	9 cut(s)	18, 55, 140, 145, 224, 258, 308, 350, 366
CviKI_1	RGCY	9 cut(s)	18, 55, 140, 145, 224, 258, 308, 350, 366
DdeI	CTNAG	2 cut(s)	309, 417
DpnI	GATC	2 cut(s)	136, 159
DpnII	GATC	2 cut(s)	134, 157
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	12
FaiI	YATR	7 cut(s)	21, 23, 43, 90, 261, 354, 428
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	3 cut(s)	158, 260, 392
Fsp4HI	GCNGC	1 cut(s)	289
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	18, 350, 366
HapII	CCGG	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	100, 253
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	50, 184, 241, 409
Hpy8I	GTNNAC	2 cut(s)	100, 253
HpyAV	CCTTC	3 cut(s)	8, 56, 289
HpyCH4III	ACNGT	2 cut(s)	339, 436
HpyCH4V	TGCA	5 cut(s)	37, 62, 179, 291, 447
HpyF3I	CTNAG	2 cut(s)	309, 417
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	134, 157
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	6 cut(s)	21, 169, 189, 222, 277, 376
Lsp1109I	GCAGC	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	136, 159
MboI	GATC	2 cut(s)	134, 157
MboII	GAAGA	3 cut(s)	96, 163, 424
MluCI	AATT	2 cut(s)	120, 264
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	2 cut(s)	304, 385
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	99, 451
MspI	CCGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	37
NaeI	GCCGGC	1 cut(s)	364
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	2 cut(s)	134, 157
NgoMIV	GCCGGC	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	99, 451
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	134, 157
Sau96I	GGNCC	1 cut(s)	348
SetI	ASST	6 cut(s)	48, 147, 199, 260, 310, 315
SfcI	CTRYAG	2 cut(s)	289, 352
Sse9I	AATT	2 cut(s)	120, 264
TaaI	ACNGT	2 cut(s)	339, 436
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	120, 264
Tru1I	TTAA	2 cut(s)	99, 451
Tru9I	TTAA	2 cut(s)	99, 451
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	4 cut(s)	30, 336, 342, 413
TspGWI	ACGGA	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.