Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

84685224 .. 84686545

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAGAAACCAGAAAGGACTCTCCTTTCCATCACCACCCTCCGTCACCATTGCAATGGGCTCCGCTATCAAACCTGTCAGAATTTCCGCTCTCATATGGGAGAGAAGATAGCAACCTGAATGTGACAACGTTCATCAAATTGACGACAGTTAAGAAGAAGAAGAACGAGACCACTTCGGTACATGTGGGATCAGTTCCTCTGGGCACCTCTGTCTTTGTTAGTTTTATGTTAGGTGCTGCACTTTGTCTGGGACTTTTCTTTGGTTTCCGAAAGAAACATGCATGGTTTCCGCAAAATGATTTGGACACAAATTTGCATTCTTTTAGTCACAAAGAGCTCGAAGAAGCAACAAATGGATTCAACGAAGAATTAGGGAAGGGTTCTTTCGGAGTTGTTTACAAAGGGATATTACAAATTGGTTTGGGTGTCCAAGTGGCAGTGAAGAAGCTCAACTGTTGGATACAAGATGGTGAGAAGGAATTCAAGACAGAACTGAACATAATTGGTCGGACACATCACAAGAATCTGGTTCACCTGATTGGATATTGTGATGAGGGACAACAGCGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

192

Amino Acids

21.42

Weight (kDa)

8.4

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	121 - 188	7.9e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	122 - 189	2.3e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	3 cut(s)	65, 89, 293
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	83, 313, 482
AfaI	GTAC	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	364, 487
AluBI	AGCT	2 cut(s)	340, 451
AluI	AGCT	2 cut(s)	340, 451
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	83, 313, 482
Asp700I	GAANNNNTTC	1 cut(s)	482
AsuHPI	GGTGA	4 cut(s)	26, 39, 485, 527
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	2 cut(s)	64, 342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	39, 464
BciVI	GTATCC	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	63, 208
BsaI	GGTCTC	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	50, 62
BseMI	GCAATG	2 cut(s)	50, 62
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	64, 209, 342
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	3 cut(s)	65, 89, 293
BspLI	GGNNCC	2 cut(s)	63, 208
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	50, 62
BssMI	GATC	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	151, 458
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	191
BstNSI	RCATGY	2 cut(s)	188, 284
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	3 cut(s)	185, 281, 285
CviJI	RGCY	3 cut(s)	62, 340, 451
CviKI_1	RGCY	3 cut(s)	62, 340, 451
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
DrdI	GACNNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	64, 342
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	2 cut(s)	64, 342
FaeI	CATG	3 cut(s)	188, 284, 288
FaiI	YATR	7 cut(s)	97, 99, 186, 230, 282, 286, 503
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	3 cut(s)	184, 280, 284
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	240
FriOI	GRGCYC	2 cut(s)	64, 342
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	574
GluI	GCNGC	1 cut(s)	240
HgaI	GACGC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	188, 284, 288
HinfI	GANTC	3 cut(s)	20, 360, 526
HphI	GGTGA	4 cut(s)	26, 39, 485, 527
Hpy166II	GTNNAC	2 cut(s)	400, 535
Hpy188I	TCNGA	4 cut(s)	82, 272, 392, 513
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	2 cut(s)	400, 535
HpyAV	CCTTC	2 cut(s)	373, 472
HpyCH4III	ACNGT	2 cut(s)	151, 458
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	4 cut(s)	55, 242, 284, 319
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	188, 284, 288
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	25, 89, 131, 188, 236, 515, 551
Lsp1109I	GCAGC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	45, 124, 329
MalI	GATC	1 cut(s)	193
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	1 cut(s)	191
MboII	GAAGA	7 cut(s)	119, 169, 172, 175, 356, 380, 457
MhlI	GDGCHC	3 cut(s)	64, 209, 342
MluCI	AATT	7 cut(s)	83, 140, 313, 371, 417, 482, 504
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	440, 491
MnlI	CCTC	4 cut(s)	51, 210, 220, 550
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	319
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	3 cut(s)	188, 284, 288
NlaIV	GGNNCC	2 cut(s)	63, 208
NmuCI	GTSAC	3 cut(s)	45, 124, 329
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	188, 284
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	360, 526
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PscI	ACATGT	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	63, 208
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	3 cut(s)	64, 209, 342
SetI	ASST	8 cut(s)	78, 120, 134, 212, 238, 342, 453, 540
SmiMI	CAYNNNNRTG	1 cut(s)	55
Sse9I	AATT	7 cut(s)	83, 140, 313, 371, 417, 482, 504
SsiI	CCGC	3 cut(s)	65, 89, 293
SspMI	CTAG	1 cut(s)	574
SstI	GAGCTC	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	151, 458
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	342
TasI	AATT	7 cut(s)	83, 140, 313, 371, 417, 482, 504
TfiI	GAWTC	2 cut(s)	360, 526
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	3 cut(s)	45, 124, 329
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	45, 124, 329
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	447
XapI	RAATTY	3 cut(s)	83, 313, 482
XceI	RCATGY	2 cut(s)	188, 284
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	1 cut(s)	574
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.