RLG00000036837

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
N/A
Physical Location & Seq
Reverse (-)
85532215 .. 85533045
831 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036837

Sequence Viewer

Length: 390 bp
ATGAAAGGTTTACAAAGCATCCACTATATGACACCAGCAACAAATAATAAAAAGAGTGTCTCATCGAAGCAGGGGAAATATATTCTCTTCTCTCATTCTCTGTCCAAAAGTCTCTTCTCCAACTCTCCAAGGCAGAATACTTCGGGGTCTGTAACACTGAAGCTAATGGAATTGTATTACTTCCAGATGGCCATGGCGATTATTGCGGTAATTGTGACATGGATTGGTGTCATAGCTACTATTAAGTGGATATGGACTCTAGTGAAGCATCGGTTGGGTTACATGGTTGAAAAGCATGAGCCAACATCGCAGGATAATCAAGAGTTCGTCAACATCGATGCCTCCAGACCTCTTCCTTCACCATCAGCTGAATCATCAACAGCTCGTTGA

Protein Analysis

130

Amino Acids

14.52

Weight (kDa)

9.82

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 290
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 257, 289
AluBI AGCT 4 cut(s) 163, 236, 368, 383
AluI AGCT 4 cut(s) 163, 236, 368, 383
Alw26I GTCTC 2 cut(s) 64, 116
AoxI GGCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 351
BalI TGGCCA 1 cut(s) 191
BccI CCATC 2 cut(s) 181, 370
BcoDI GTCTC 2 cut(s) 64, 116
BfaI CTAG 1 cut(s) 260
BmsI GCATC 3 cut(s) 27, 277, 328
BpmI CTGGAG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 128, 192
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 128, 192
BseGI GGATG 1 cut(s) 18
BshFI GGCC 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 64, 116
BsnI GGCC 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 128, 192
BssT1I CCWWGG 2 cut(s) 128, 192
Bst6I CTCTTC 3 cut(s) 92, 119, 357
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 64, 116
BstMWI GCNNNNNNNGC 2 cut(s) 203, 307
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 336
CviAII CATG 4 cut(s) 193, 219, 283, 296
CviJI RGCY 6 cut(s) 163, 191, 236, 301, 368, 383
CviKI_1 RGCY 6 cut(s) 163, 191, 236, 301, 368, 383
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 3 cut(s) 92, 119, 357
EarI CTCTTC 3 cut(s) 92, 119, 357
Eco130I CCWWGG 2 cut(s) 128, 192
Eco57I CTGAAG 1 cut(s) 179
EcoT14I CCWWGG 2 cut(s) 128, 192
ErhI CCWWGG 2 cut(s) 128, 192
FaeI CATG 4 cut(s) 196, 222, 286, 299
FaiI YATR 9 cut(s) 27, 29, 81, 194, 220, 233, 253, 284, 297
FatI CATG 4 cut(s) 192, 218, 282, 295
FokI GGATG 1 cut(s) 5
FspBI CTAG 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 1 cut(s) 191
Hin1II CATG 4 cut(s) 196, 222, 286, 299
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 2 cut(s) 256, 371
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 2 cut(s) 11, 331
Hpy188III TCNNGA 3 cut(s) 184, 320, 345
Hpy8I GTNNAC 2 cut(s) 11, 331
HpyAV CCTTC 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 307
Hsp92II CATG 4 cut(s) 196, 222, 286, 299
LpnPI CCDG 5 cut(s) 48, 56, 197, 296, 358
LweI GCATC 3 cut(s) 27, 277, 328
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 3 cut(s) 151, 214, 278
MboII GAAGA 3 cut(s) 79, 106, 344
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 170, 210
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 352, 360
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 203, 307
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 4 cut(s) 196, 222, 286, 299
NmuCI GTSAC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 1 cut(s) 371
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 243
SchI GAGTC 1 cut(s) 250
SetI ASST 6 cut(s) 10, 165, 238, 352, 370, 385
SfaNI GCATC 3 cut(s) 27, 277, 328
Sse9I AATT 2 cut(s) 170, 210
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 128, 192
TaqI TCGA 2 cut(s) 65, 336
TasI AATT 2 cut(s) 170, 210
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 162
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.