Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7983716.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 249

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7983716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

aacggttcgaggccgaaccgggctgccgggagcgggtactggaaggcgaccggagccgataagccgatcgggcttccgaagccggtcgggattaaaaaggctttggtattctacgccggaaaagccccgagaggagagaagaccaattggattatgcatgagtatcgcctcgccgacgtggatcgaacgcctcgcaagagaaacagcttaagggtaataatcaatctcctcgataatctatgggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

82

Amino Acids

9.16

Weight (kDa)

10.58

Isoelectric Point (pI)

17.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	33
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	23
AsuC2I	CCSGG	2 cut(s)	20, 28
AvaI	CYCGRG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcnI	CCSGG	2 cut(s)	20, 28
BfrI	CTTAAG	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	20, 28
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	20, 28
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	2 cut(s)	20, 28
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	2 cut(s)	147, 218
BseXI	GCAGC	1 cut(s)	10
Bsh1285I	CGRYCG	3 cut(s)	51, 69, 87
BshFI	GGCC	1 cut(s)	13
BsiEI	CGRYCG	3 cut(s)	51, 69, 87
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	5 cut(s)	19, 27, 51, 83, 117
BslI	CCNNNNNNNGG	1 cut(s)	33
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	66, 181
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	2 cut(s)	66, 181
Bst4CI	ACNGT	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	69, 184
BstMBI	GATC	2 cut(s)	66, 181
BstMCI	CGRYCG	3 cut(s)	51, 69, 87
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 70, 79, 122
BstSCI	CCNGG	2 cut(s)	18, 26
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	9 cut(s)	13, 23, 56, 64, 73, 82, 101, 125, 207
CviKI_1	RGCY	9 cut(s)	13, 23, 56, 64, 73, 82, 101, 125, 207
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	68, 183
DpnII	GATC	2 cut(s)	66, 181
Eco88I	CYCGRG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	1 cut(s)	161
FaiI	YATR	4 cut(s)	155, 159, 241, 247
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	5 cut(s)	19, 27, 51, 83, 117
Hin1II	CATG	1 cut(s)	161
HpaII	CCGG	5 cut(s)	19, 27, 51, 83, 117
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 70, 79, 122
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	66, 181
LmnI	GCTCC	2 cut(s)	30, 53
LpnPI	CCDG	6 cut(s)	25, 32, 40, 64, 96, 130
Lsp1109I	GCAGC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	177
MalI	GATC	2 cut(s)	68, 183
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	66, 181
MboII	GAAGA	1 cut(s)	151
MfeI	CAATTG	1 cut(s)	145
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	5 cut(s)	3, 125, 179, 201, 239
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	2 cut(s)	93, 209
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	5 cut(s)	19, 27, 51, 83, 117
MspR9I	CCNGG	2 cut(s)	20, 28
MunI	CAATTG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	53, 70, 79, 122
NciI	CCSGG	2 cut(s)	20, 28
NdeII	GATC	2 cut(s)	66, 181
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	25
Ple19I	CGATCG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	93, 209
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	66, 181
ScrFI	CCNGG	2 cut(s)	20, 28
SetI	ASST	2 cut(s)	180, 209
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	18, 26
TaaI	ACNGT	1 cut(s)	5
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	8, 184, 231
TasI	AATT	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	93, 209
Tru9I	TTAA	2 cut(s)	93, 209
TseI	GCWGC	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.