Rmu_co7998710.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7998710.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 299
298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7998710.1_g000001.1.cds

Sequence Viewer

Length: 298 bp
atgtttgtggaggcagagctcgagagcaatacgactctaaaagtgcttttggaggtgaagaagtcgtttttggaggacccaatatccgaaacagccctgcatggatggtctgaaagcaacccaaatttctgtacttggagaggagtgacatgcgggtctgactcggtcgatgactcggtccaagtggtcggcctcaacctttccgactcgtcactcggcgggtcaatatctccccaactcggtagtttgaagtacctgctccacctcgatctctcttctaacggcctcacgggtccca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

99

Amino Acids

10.57

Weight (kDa)

4.35

Isoelectric Point (pI)

26.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 264
AciI CCGC 2 cut(s) 153, 219
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 2 cut(s) 133, 254
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 2 cut(s) 190, 283
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 76, 178, 293
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 3 cut(s) 76, 178, 293
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 264
Bme18I GGWCC 3 cut(s) 76, 178, 293
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 3 cut(s) 76, 178, 293
BmiI GGNNCC 3 cut(s) 78, 294, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 2 cut(s) 192, 285
BsiEI CGRYCG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 2 cut(s) 192, 285
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 153, 219
BspANI GGCC 2 cut(s) 192, 285
BspLI GGNNCC 3 cut(s) 78, 294, 295
BspMI ACCTGC 1 cut(s) 264
BssMI GATC 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 192, 285
BtsCI GGATG 1 cut(s) 110
BveI ACCTGC 1 cut(s) 264
Cfr13I GGNCC 3 cut(s) 76, 178, 293
Csp6I GTAC 2 cut(s) 132, 253
CviAII CATG 2 cut(s) 101, 150
CviJI RGCY 4 cut(s) 19, 95, 192, 285
CviKI_1 RGCY 4 cut(s) 19, 95, 192, 285
CviQI GTAC 2 cut(s) 132, 253
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 3 cut(s) 76, 178, 293
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 2 cut(s) 76, 293
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 2 cut(s) 104, 153
FaiI YATR 2 cut(s) 102, 151
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 100, 149
FauI CCCGC 2 cut(s) 146, 212
FokI GGATG 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 192, 285
Hin1II CATG 2 cut(s) 104, 153
HinfI GANTC 4 cut(s) 34, 161, 173, 206
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 4 cut(s) 88, 112, 160, 205
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 100
Hsp92II CATG 2 cut(s) 104, 153
KflI GGGWCCC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 2 cut(s) 110, 269
MaeIII GTNAC 2 cut(s) 145, 210
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 70, 267
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 124
MlyI GAGTC 4 cut(s) 28, 155, 167, 200
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 7 cut(s) 4, 46, 67, 134, 203, 275, 296
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 104, 153
NlaIV GGNNCC 3 cut(s) 78, 294, 295
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 145, 210
NspI RCATGY 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 20
PflFI GACNNNGTC 2 cut(s) 164, 176
PleI GAGTC 4 cut(s) 28, 155, 167, 200
PpsI GAGTC 4 cut(s) 28, 155, 167, 200
PpuMI RGGWCCY 2 cut(s) 76, 293
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 76, 293
PspN4I GGNNCC 3 cut(s) 78, 294, 295
PspPI GGNCC 3 cut(s) 76, 178, 293
PspPPI RGGWCCY 2 cut(s) 76, 293
PsyI GACNNNGTC 2 cut(s) 164, 176
RsaI GTAC 2 cut(s) 133, 254
RsaNI GTAC 2 cut(s) 132, 253
SacI GAGCTC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 3 cut(s) 76, 178, 293
SchI GAGTC 4 cut(s) 28, 155, 167, 200
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 21, 57, 201, 258, 267
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 3 cut(s) 76, 178, 293
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 124
SsiI CCGC 2 cut(s) 153, 219
SstI GAGCTC 1 cut(s) 21
TaqI TCGA 3 cut(s) 21, 168, 267
TaqII GACCGA 2 cut(s) 154, 166
TasI AATT 1 cut(s) 124
TatI WGTACW 1 cut(s) 131
TseFI GTSAC 2 cut(s) 145, 210
Tsp45I GTSAC 2 cut(s) 145, 210
Tth111I GACNNNGTC 2 cut(s) 164, 176
VpaK11BI GGWCC 3 cut(s) 76, 178, 293
XapI RAATTY 1 cut(s) 124
XceI RCATGY 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.