Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7999388.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

155 .. 525

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7999388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 371 bp

atgtacgacacgctcaaagacacctaccaactcttcgaagaaatcggccgcggccgattcggcaccatcctccgcgccttctgccccgtctccgccgagtccgtcgccgtcaagatcatcgacaagtccctcctcaccgacgaaaccgaccgtgcatgtcttgaaaaagaacccaagatcatgaccctcttatctccccaccccaacattctcaaaatccacaacgttttcgaaacagaggactccatggccatggtgctcgagctctgcgagcccgaaacgctctacgacaagatcgcccaccggccgttgccggagccggaagccgccggtcttatgaaacagctcctgggagctatagcccactgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009636 GO:0009931 GO:0009987 GO:0010033 GO:0010243 GO:0010857 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0046777 GO:0046898 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060992 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

123

Amino Acids

13.83

Weight (kDa)

5.03

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	2 cut(s)	51, 75
AciI	CCGC	5 cut(s)	49, 51, 73, 93, 327
AclI	AACGTT	1 cut(s)	225
AcoI	YGGCCR	4 cut(s)	46, 52, 249, 305
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	265, 346, 356
AluI	AGCT	3 cut(s)	265, 346, 356
Alw21I	GWGCWC	2 cut(s)	261, 267
Alw26I	GTCTC	1 cut(s)	94
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	46, 52, 249, 305
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	2 cut(s)	36, 231
AvaI	CYCGRG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	267, 276
Bbv12I	GWGCWC	2 cut(s)	261, 267
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	92, 292
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	3 cut(s)	49, 52, 327
BlsI	GCNGC	3 cut(s)	50, 53, 328
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	64, 318
BmrFI	CCNGG	1 cut(s)	350
Bpu14I	TTCGAA	2 cut(s)	36, 231
BsaJI	CCNNGG	4 cut(s)	49, 246, 252, 349
Bse118I	RCCGGY	2 cut(s)	303, 329
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	49, 246, 252, 349
BseGI	GGATG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	122
BseX3I	CGGCCG	3 cut(s)	46, 52, 305
Bsh1236I	CGCG	2 cut(s)	51, 75
Bsh1285I	CGRYCG	4 cut(s)	49, 55, 151, 308
BshFI	GGCC	4 cut(s)	48, 54, 251, 307
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	4 cut(s)	49, 55, 151, 308
BsiHKAI	GWGCWC	2 cut(s)	261, 267
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	304, 314, 320, 330
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	48, 54, 251, 307
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	2 cut(s)	36, 231
Bsp1286I	GDGCHC	3 cut(s)	261, 267, 276
Bsp143I	GATC	3 cut(s)	114, 177, 294
Bsp19I	CCATGG	2 cut(s)	246, 252
BspACI	CCGC	5 cut(s)	49, 51, 73, 93, 327
BspANI	GGCC	4 cut(s)	48, 54, 251, 307
BspFNI	CGCG	2 cut(s)	51, 75
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	64, 318
BspT104I	TTCGAA	2 cut(s)	36, 231
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	303, 329
BssAI	RCCGGY	2 cut(s)	303, 329
BssECI	CCNNGG	4 cut(s)	49, 246, 252, 349
BssMI	GATC	3 cut(s)	114, 177, 294
BssT1I	CCWWGG	2 cut(s)	246, 252
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	38
BstBI	TTCGAA	2 cut(s)	36, 231
BstC8I	GCNNGC	1 cut(s)	272
BstDSI	CCRYGG	3 cut(s)	49, 246, 252
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	51, 75
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	117, 180, 297
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	114, 177, 294
BstMCI	CGRYCG	4 cut(s)	49, 55, 151, 308
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 81, 271, 280
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	51, 75
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstZI	CGGCCG	3 cut(s)	46, 52, 305
BsuRI	GGCC	4 cut(s)	48, 54, 251, 307
BtgI	CCRYGG	3 cut(s)	49, 246, 252
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	303, 329
Cfr42I	CCGCGG	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	156, 181, 247, 253
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	116, 179, 296
DpnII	GATC	3 cut(s)	114, 177, 294
EaeI	YGGCCR	4 cut(s)	46, 52, 249, 305
EagI	CGGCCG	3 cut(s)	46, 52, 305
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	265
EclXI	CGGCCG	3 cut(s)	46, 52, 305
Eco130I	CCWWGG	2 cut(s)	246, 252
Eco24I	GRGCYC	2 cut(s)	267, 276
Eco52I	CGGCCG	3 cut(s)	46, 52, 305
Eco53kI	GAGCTC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	246, 252
EcoT38I	GRGCYC	2 cut(s)	267, 276
ErhI	CCWWGG	2 cut(s)	246, 252
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	4 cut(s)	159, 184, 250, 256
FaiI	YATR	6 cut(s)	157, 182, 248, 254, 338, 359
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	4 cut(s)	155, 180, 246, 252
Fnu4HI	GCNGC	3 cut(s)	49, 52, 327
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	267, 276
Fsp4HI	GCNGC	3 cut(s)	49, 52, 327
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	49, 52, 327
HaeIII	GGCC	4 cut(s)	48, 54, 251, 307
HapII	CCGG	4 cut(s)	304, 314, 320, 330
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	159, 184, 250, 256
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	3 cut(s)	57, 98, 242
HpaII	CCGG	4 cut(s)	304, 314, 320, 330
HphI	GGTGA	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	112, 161, 181
Hpy99I	CGWCG	2 cut(s)	107, 143
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 81, 271, 280
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	159, 184, 250, 256
HspAI	GCGC	1 cut(s)	75
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	114, 177, 294
LmnI	GCTCC	3 cut(s)	316, 351, 353
LpnPI	CCDG	6 cut(s)	317, 327, 333, 335, 343, 362
MaeII	ACGT	1 cut(s)	225
MalI	GATC	3 cut(s)	116, 179, 296
MboI	GATC	3 cut(s)	114, 177, 294
MboII	GAAGA	2 cut(s)	25, 50
MhlI	GDGCHC	3 cut(s)	261, 267, 276
MlsI	TGGCCA	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	2 cut(s)	107, 236
MnlI	CCTC	5 cut(s)	80, 140, 143, 197, 232
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	4 cut(s)	304, 314, 320, 330
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	51, 75
MwoI	GCNNNNNNNGC	4 cut(s)	60, 81, 271, 280
NcoI	CCATGG	2 cut(s)	246, 252
NdeII	GATC	3 cut(s)	114, 177, 294
NlaIII	CATG	4 cut(s)	159, 184, 250, 256
NlaIV	GGNNCC	2 cut(s)	64, 318
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	2 cut(s)	36, 231
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	50, 53, 328
PleI	GAGTC	2 cut(s)	106, 236
PpsI	GAGTC	2 cut(s)	106, 236
Psp124BI	GAGCTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	64, 318
PspXI	VCTCGAGB	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	267
SacII	CCGCGG	1 cut(s)	52
SatI	GCNGC	3 cut(s)	49, 52, 327
Sau3AI	GATC	3 cut(s)	114, 177, 294
SchI	GAGTC	2 cut(s)	107, 236
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	3 cut(s)	261, 267, 276
SetI	ASST	5 cut(s)	26, 228, 267, 348, 358
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	260
Sfr303I	CCGCGG	1 cut(s)	52
SfuI	TTCGAA	2 cut(s)	36, 231
SgrBI	CCGCGG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	5 cut(s)	49, 51, 73, 93, 327
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	246, 252
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	36, 120, 231, 261
TauI	GCSGC	3 cut(s)	51, 54, 329
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.