Rmu_co8002338.1_g000001

4-coumarate--CoA ligase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8002338.1
N/A
Physical Location & Seq
Forward (+)
1 .. 527
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8002338.1_g000001.1.cds

Sequence Viewer

Length: 430 bp
cggtcctcacgacaccgtcgctctcaccttccccaacaccattgagtttgtggtgatgttcttggcggtgatacggtgccgagccaccgccgcgccgcttaacgcggcgtacacggcggaggagttcgagttctacctctccgactccgagtcgaagcttctgatcacggcggagaagccaattcagtcggctctgaccgccgcttccaagctcagcatcccttacgtgacggcgtcgctgcccgactccgccgcacatatttctctgtcttcaatcaccaccgccggcaagcctagttccgactcggtttcggaactcgttaacgacccgtccgacgtggcactcttcctccacacgtcggggaccacgagccggcccaagggggttcccctgacccagctcaatctggcctcgtcggttcggaacatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00630 ko01100 map00630 map01100
Pfam Domains
Protein Families
AMP-binding AMP-binding_C Pkinase

Protein Analysis

143

Amino Acids

15.07

Weight (kDa)

5.21

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccII CGCG 2 cut(s) 93, 105
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 359, 373, 380
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 1 cut(s) 274
AhdI GACNNNNNGTC 1 cut(s) 149
AjiI CACGTC 2 cut(s) 338, 358
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 158, 212, 401
AluI AGCT 3 cut(s) 158, 212, 401
AoxI GGCC 2 cut(s) 375, 409
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 3 cut(s) 3, 364, 376
AsuHPI GGTGA 4 cut(s) 17, 65, 80, 269
AvaII GGWCC 2 cut(s) 3, 364
BanI GGYRCC 1 cut(s) 76
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 226
BceAI ACGGC 3 cut(s) 130, 184, 247
BclI TGATCA 1 cut(s) 163
BfaI CTAG 1 cut(s) 295
BisI GCNGC 6 cut(s) 91, 96, 106, 202, 240, 253
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 6 cut(s) 92, 97, 107, 203, 241, 254
Bme18I GGWCC 2 cut(s) 3, 364
BmeRI GACNNNNNGTC 1 cut(s) 149
BmgBI CACGTC 2 cut(s) 338, 358
BmgT120I GGNCC 3 cut(s) 3, 364, 376
BmiI GGNNCC 3 cut(s) 78, 365, 388
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 334, 364
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 373, 380
Bse118I RCCGGY 2 cut(s) 285, 373
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 359, 373, 380
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 93, 105
BshFI GGCC 2 cut(s) 377, 411
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 286, 374
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 3 cut(s) 359, 373, 380
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 377, 411
Bsp143I GATC 1 cut(s) 163
Bsp1720I GCTNAGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 377, 411
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 2 cut(s) 93, 105
BspLI GGNNCC 3 cut(s) 78, 365, 388
BspT107I GGYRCC 1 cut(s) 76
BsrFI RCCGGY 2 cut(s) 285, 373
BssAI RCCGGY 2 cut(s) 285, 373
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 379
Bst2BI CACGAG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 17, 76
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 287, 291, 375
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 93, 105
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 90, 114, 198
BstUI CGCG 2 cut(s) 93, 105
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 377, 411
BtrI CACGTC 2 cut(s) 338, 358
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 287, 291, 375
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 2 cut(s) 285, 373
Cfr13I GGNCC 3 cut(s) 3, 364, 376
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 110
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 3 cut(s) 132, 186, 239
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 3, 364
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaiI YATR 1 cut(s) 259
FaqI GGGAC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 91, 96, 106, 202, 240, 253
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 91, 96, 106, 202, 240, 253
FspBI CTAG 1 cut(s) 295
GlaI GCGC 1 cut(s) 94
GluI GCNGC 6 cut(s) 91, 96, 106, 202, 240, 253
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 2 cut(s) 377, 411
HapII CCGG 2 cut(s) 286, 374
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 4 cut(s) 144, 150, 246, 303
HpaI GTTAAC 1 cut(s) 323
HpaII CCGG 2 cut(s) 286, 374
HphI GGTGA 4 cut(s) 17, 65, 80, 269
Hpy166II GTNNAC 2 cut(s) 112, 323
Hpy188I TCNGA 8 cut(s) 143, 149, 163, 196, 302, 314, 335, 424
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 112, 323
Hpy99I CGWCG 5 cut(s) 21, 239, 339, 362, 419
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 17, 76
HpyCH4IV ACGT 3 cut(s) 226, 337, 357
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 114, 198
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 3 cut(s) 226, 337, 357
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 1 cut(s) 93
KroI GCCGGC 2 cut(s) 285, 373
KroNI GCCGGC 2 cut(s) 287, 375
Ksp22I TGATCA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 299, 387, 393, 405, 411
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 295
MaeII ACGT 3 cut(s) 226, 337, 357
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 262, 338
MluCI AATT 1 cut(s) 181
MlyI GAGTC 4 cut(s) 138, 159, 240, 297
MmeI TCCRAC 3 cut(s) 166, 325, 358
MnlI CCTC 5 cut(s) 16, 113, 147, 360, 422
MroNI GCCGGC 2 cut(s) 285, 373
MseI TTAA 2 cut(s) 100, 322
MspI CCGG 2 cut(s) 286, 374
MvnI CGCG 2 cut(s) 93, 105
MwoI GCNNNNNNNGC 3 cut(s) 90, 114, 198
NaeI GCCGGC 2 cut(s) 287, 375
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 2 cut(s) 285, 373
NlaIV GGNNCC 3 cut(s) 78, 365, 388
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 366
PdiI GCCGGC 2 cut(s) 287, 375
PflFI GACNNNGTC 2 cut(s) 15, 233
PkrI GCNGC 6 cut(s) 92, 97, 107, 203, 241, 254
PleI GAGTC 4 cut(s) 138, 158, 240, 297
PpsI GAGTC 4 cut(s) 138, 158, 240, 297
Ppu21I YACGTR 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 78, 365, 388
PspPI GGNCC 3 cut(s) 3, 364, 376
PsyI GACNNNGTC 2 cut(s) 15, 233
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 100, 322
SatI GCNGC 6 cut(s) 91, 96, 106, 202, 240, 253
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 3 cut(s) 3, 364, 376
SchI GAGTC 4 cut(s) 138, 159, 240, 297
SetI ASST 8 cut(s) 30, 139, 160, 214, 229, 340, 360, 403
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 2 cut(s) 3, 364
Sse9I AATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 17, 76
TaiI ACGT 3 cut(s) 229, 340, 360
TaqI TCGA 2 cut(s) 127, 153
TasI AATT 1 cut(s) 181
TauI GCSGC 5 cut(s) 93, 98, 108, 204, 255
Tru1I TTAA 2 cut(s) 100, 322
Tru9I TTAA 2 cut(s) 100, 322
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 227
Tth111I GACNNNGTC 2 cut(s) 15, 233
VpaK11BI GGWCC 2 cut(s) 3, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.