Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8003752.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 406

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8003752.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggaaaagcacgagcatcagaatccatcgaagtcagtgaacgacgcagtgtacaagctccagctggcactcctcgacggcgtcaaaaccctagaccacctctacttagccggctccataatctcccgctccgactacaacgacgtcgttacggagcgatccatcgccgacctatgcggctaccctctctgctccaatgccctaccttccgaagcttcccgttcccgcaagggtcactatcgcatttcgctcaaggagcacaaggtgtacgatctccgagagacgaagctctactgctcctccaagtgcgtgatcgatagcaaggcgtttgctctgagcttgagcgaggagaggtgtgatatcttggatttcggaaaggtcgagagggttttggggcaatttggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

135

Amino Acids

15.2

Weight (kDa)

6.95

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	3 cut(s)	127, 177, 226
AclWI	GGATC	1 cut(s)	153
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	53, 269
AluBI	AGCT	5 cut(s)	58, 64, 215, 289, 339
AluI	AGCT	5 cut(s)	58, 64, 215, 289, 339
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	2 cut(s)	34, 170
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	236, 361
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bse118I	RCCGGY	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	62, 289, 362
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	158, 271, 312
BspACI	CCGC	3 cut(s)	127, 177, 226
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	3 cut(s)	158, 271, 312
BssNI	GRCGYC	2 cut(s)	81, 144
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	81, 144
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	66, 112
BstDEI	CTNAG	2 cut(s)	106, 335
BstKTI	GATC	3 cut(s)	161, 274, 315
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	158, 271, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	42, 54
Cac8I	GCNNGC	2 cut(s)	66, 112
Cfr10I	RCCGGY	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	2 cut(s)	52, 268
CviJI	RGCY	8 cut(s)	58, 64, 110, 114, 180, 215, 289, 339
CviKI_1	RGCY	8 cut(s)	58, 64, 110, 114, 180, 215, 289, 339
CviQI	GTAC	2 cut(s)	52, 268
DdeI	CTNAG	2 cut(s)	106, 335
DpnI	GATC	3 cut(s)	160, 273, 314
DpnII	GATC	3 cut(s)	158, 271, 312
DraIII	CACNNNGTG	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	275
FaiI	YATR	2 cut(s)	119, 175
FauI	CCCGC	2 cut(s)	134, 233
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	53, 70
Hin1I	GRCGYC	2 cut(s)	81, 144
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	3 cut(s)	40, 52, 268
Hpy188I	TCNGA	6 cut(s)	21, 133, 211, 278, 336, 374
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	40, 52, 268
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyAV	CCTTC	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	106, 335
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	81, 144
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	158, 271, 312
LmnI	GCTCC	7 cut(s)	63, 119, 134, 154, 197, 256, 302
LpnPI	CCDG	3 cut(s)	50, 74, 124
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	148, 233
MalI	GATC	3 cut(s)	160, 273, 314
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	3 cut(s)	158, 271, 312
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	83, 110, 195, 310, 340, 345, 378
MroNI	GCCGGC	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	256
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	3 cut(s)	158, 271, 312
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	2 cut(s)	53, 269
RsaNI	GTAC	2 cut(s)	52, 268
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	158, 271, 312
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	127, 177, 226
SspMI	CTAG	1 cut(s)	92
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	4 cut(s)	29, 75, 315, 381
TasI	AATT	1 cut(s)	398
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	2 cut(s)	42, 54
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	42, 54
Tth111I	GACNNNGTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.