Rmu_co8011626.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8011626.1
N/A
Physical Location & Seq
Forward (+)
3 .. 533
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8011626.1_g000001.1.cds

Sequence Viewer

Length: 449 bp
atgaatgacctttctcaggttagtggctgcttgtcttacaatgagaaaatatcggatggtttctacaatattttggggatgaatccgtatctatgggtgatgtgcaatgatgtggaagaaggtaaacgtctaccatcgctgatgtcacttagagcaattaaacccgcagagacatcaatggaggtggttcttgttgacaaacatggggactctcgcctcaaggaacttcaagataaggcacaagaactttattgtgcttcagagaatgccttggtgttggtggagaaacttggcaagcttgtcgccatctacatggggggtacttatcctgtggagcaaggagatctccacatgcgctggaaagtggttagcaagagattgagggaattccaaaagtgtattgtgctccccattggcagcctatcaatggggctctgcaggcatcgtgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

7.62

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AciI CCGC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 16, 427
AgsI TTSAA 1 cut(s) 230
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 27, 417
ApoI RAATTY 1 cut(s) 386
AspLEI GCGC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 109
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 14, 429
BccI CCATC 3 cut(s) 50, 142, 314
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 436
BglII AGATCT 1 cut(s) 343
BisI GCNGC 2 cut(s) 28, 418
BlsI GCNGC 2 cut(s) 29, 419
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 427
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 61, 84
BseLI CCNNNNNNNGG 2 cut(s) 16, 427
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 14, 429
BsiHKAI GWGCWC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 16, 427
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 408, 435
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 296, 440
BstDEI CTNAG 2 cut(s) 15, 149
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 61, 84
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 2 cut(s) 14, 429
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 1 cut(s) 343
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 61, 84
Cac8I GCNNGC 2 cut(s) 296, 440
CfoI GCGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 321
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 3 cut(s) 203, 313, 352
CviJI RGCY 4 cut(s) 27, 298, 420, 433
CviKI_1 RGCY 4 cut(s) 27, 298, 420, 433
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 2 cut(s) 15, 149
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 3 cut(s) 206, 316, 355
FaiI YATR 4 cut(s) 94, 204, 314, 353
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 202, 312, 351
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 28, 418
FokI GGATG 2 cut(s) 68, 91
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 28, 418
GlaI GCGC 1 cut(s) 356
GluI GCNGC 2 cut(s) 28, 418
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 206, 316, 355
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 82, 209
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 125, 131, 196
Hpy188I TCNGA 2 cut(s) 55, 262
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 3 cut(s) 125, 131, 196
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 105, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 2 cut(s) 15, 149
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 206, 316, 355
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 334, 411
LpnPI CCDG 4 cut(s) 2, 342, 343, 424
Lsp1109I GCAGC 2 cut(s) 14, 429
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 144
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 1 cut(s) 128
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 408, 435
MluCI AATT 2 cut(s) 156, 386
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 175, 227, 375
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 1 cut(s) 343
NlaIII CATG 3 cut(s) 206, 316, 355
NmuCI GTSAC 1 cut(s) 144
NspI RCATGY 1 cut(s) 355
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 29, 419
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 28, 418
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 408, 435
SetI ASST 6 cut(s) 12, 21, 124, 130, 186, 300
SfcI CTRYAG 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 156, 386
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 70
StyI CCWWGG 1 cut(s) 270
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 156, 386
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 2 cut(s) 27, 417
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 17, 95
TspGWI ACGGA 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.