Rmu_co8032664.1_g000001
TCP Family

T-complex protein 11

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8032664.1
N/A
Physical Location & Seq
Reverse (-)
168 .. 524
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8032664.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atggaagaaattgttgaatcaatcagtgatttctccatcaatggaaatgaagttgtggacactgagaaagttcggtcaagaaagatggttatagcccggatgttagcaaagagcctgcaagctggggatcccgtgtttgagagggtttcccgtgctgtttatatggctgcaagaggagcggttcttggggggagtggacctgttggaagaaaattggctgaaactgcactccggcaagttggagcagcggtgctgactgacagtgtggtggaagctactgaagttttagttgtggctgctaccatatcagttggtgttcatggagcatggtatgtacatatgactgataacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

12.55

Weight (kDa)

5.64

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 2 cut(s) 179, 248
AclWI GGATC 2 cut(s) 122, 135
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 122, 275
AluI AGCT 2 cut(s) 122, 275
AlwI GGATC 2 cut(s) 122, 135
ApeKI GCWGC 3 cut(s) 167, 245, 296
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 154, 257, 283
BccI CCATC 2 cut(s) 44, 79
BcnI CCSGG 1 cut(s) 97
BisI GCNGC 3 cut(s) 168, 246, 297
BlsI GCNGC 3 cut(s) 169, 247, 298
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 154, 257, 283
BseYI CCCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 97, 232
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 179, 248
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 122, 135
BsrBI CCGCTC 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 334
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 116, 120
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 176, 224
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 154, 257, 283
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 31, 60, 268
Cac8I GCNNGC 2 cut(s) 116, 120
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 335
CviAII CATG 3 cut(s) 320, 327, 352
CviJI RGCY 7 cut(s) 95, 114, 122, 167, 218, 275, 296
CviKI_1 RGCY 7 cut(s) 95, 114, 122, 167, 218, 275, 296
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 300
FaeI CATG 3 cut(s) 323, 330, 355
FatI CATG 3 cut(s) 319, 326, 351
FauNDI CATATG 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 168, 246, 297
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 168, 246, 297
GluI GCNGC 3 cut(s) 168, 246, 297
GsaI CCCAGC 1 cut(s) 126
HapII CCGG 2 cut(s) 97, 232
Hin1II CATG 3 cut(s) 323, 330, 355
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 97, 232
Hpy166II GTNNAC 2 cut(s) 58, 197
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 2 cut(s) 58, 197
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 118, 170, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 224
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 3 cut(s) 323, 330, 355
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 176, 242, 323
LpnPI CCDG 5 cut(s) 108, 110, 128, 213, 245
Lsp1109I GCAGC 3 cut(s) 154, 257, 283
MalI GATC 1 cut(s) 129
MbiI CCGCTC 1 cut(s) 179
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 17, 219
MflI RGATCY 1 cut(s) 127
MluCI AATT 2 cut(s) 9, 212
MmeI TCCRAC 2 cut(s) 184, 220
MnlI CCTC 2 cut(s) 135, 167
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 97, 232
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 176, 224
NciI CCSGG 1 cut(s) 97
NdeI CATATG 1 cut(s) 339
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 323, 330, 355
NlaIV GGNNCC 1 cut(s) 129
NspI RCATGY 1 cut(s) 355
PciI ACATGT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 169, 247, 298
PscI ACATGT 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SatI GCNGC 3 cut(s) 168, 246, 297
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 97
SetI ASST 3 cut(s) 124, 202, 277
SinI GGWCC 1 cut(s) 197
Sse9I AATT 2 cut(s) 9, 212
SsiI CCGC 2 cut(s) 179, 248
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 263
TaqII GACCGA 1 cut(s) 63
TasI AATT 2 cut(s) 9, 212
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 3 cut(s) 31, 67, 268
TseI GCWGC 3 cut(s) 167, 245, 296
TspDTI ATGAA 2 cut(s) 63, 308
TspRI CASTG 3 cut(s) 31, 67, 268
VpaK11BI GGWCC 1 cut(s) 197
XceI RCATGY 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.