Rmu_co8034164.1_g000001

Protein kinase PINOID-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8034164.1
N/A
Physical Location & Seq
Reverse (-)
331 .. 548
218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8034164.1_g000001.1.cds

Sequence Viewer

Length: 218 bp
tgaacaaggacccggagcggcggctcgggtcgaagcgcggcgctgctgacgtcaagaagcatcctttcttcaaggggatcaacttggcgttgatacggtcgctgcggccaccgatggtcccgggtctgagaaggcagaacacgacgccgttttaccacgccaagtctgatgatcagaataaaaataacggacagtctggggcgttcgattacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009986 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010154 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0080167 GO:0090558 GO:0090567 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

71

Amino Acids

8.07

Weight (kDa)

10.49

Isoelectric Point (pI)

67.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 38
AciI CCGC 4 cut(s) 18, 21, 38, 105
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 106
AcyI GRCGYC 2 cut(s) 50, 145
AgsI TTSAA 1 cut(s) 72
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 2 cut(s) 25, 120
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 43, 102
AspLEI GCGC 2 cut(s) 38, 43
AspS9I GGNCC 2 cut(s) 9, 117
AsuC2I CCSGG 3 cut(s) 13, 121, 122
AvaI CYCGRG 2 cut(s) 25, 120
AvaII GGWCC 2 cut(s) 9, 117
BbvI GCAGC 2 cut(s) 30, 89
BccI CCATC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 132
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 3 cut(s) 13, 121, 122
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 6 cut(s) 19, 22, 39, 44, 103, 106
BlsI GCNGC 6 cut(s) 20, 23, 40, 45, 104, 107
Bme1390I CCNGG 3 cut(s) 13, 121, 122
Bme18I GGWCC 2 cut(s) 9, 117
BmeT110I CYCGRG 2 cut(s) 25, 120
BmgT120I GGNCC 2 cut(s) 9, 117
BmiI GGNNCC 2 cut(s) 11, 119
BmrFI CCNGG 3 cut(s) 13, 121, 122
BmsI GCATC 1 cut(s) 69
BpuMI CCSGG 3 cut(s) 13, 121, 122
BsaHI GRCGYC 2 cut(s) 50, 145
BsaJI CCNNGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 30, 89
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 25, 120
BsiSI CCGG 2 cut(s) 13, 121
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 2 cut(s) 25, 120
Bsp143I GATC 2 cut(s) 77, 171
BspACI CCGC 4 cut(s) 18, 21, 38, 105
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 119
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 11, 119
BspPI GGATC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 77, 171
BssNI GRCGYC 2 cut(s) 50, 145
Bst4CI ACNGT 2 cut(s) 98, 194
BstACI GRCGYC 2 cut(s) 50, 145
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 38, 43
BstKTI GATC 2 cut(s) 80, 174
BstMBI GATC 2 cut(s) 77, 171
BstMCI CGRYCG 1 cut(s) 100
BstSCI CCNGG 3 cut(s) 11, 119, 120
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 30, 89
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 60
CfoI GCGC 2 cut(s) 38, 43
Cfr13I GGNCC 2 cut(s) 9, 117
Cfr9I CCCGGG 1 cut(s) 120
CseI GACGC 1 cut(s) 153
CviJI RGCY 2 cut(s) 24, 108
CviKI_1 RGCY 2 cut(s) 24, 108
DdeI CTNAG 1 cut(s) 127
DpnI GATC 2 cut(s) 79, 173
DpnII GATC 2 cut(s) 77, 171
EaeI YGGCCR 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 9, 117
Eco88I CYCGRG 2 cut(s) 25, 120
EcoO109I RGGNCCY 1 cut(s) 9
FaqI GGGAC 1 cut(s) 103
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 6 cut(s) 19, 22, 39, 44, 103, 106
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 6 cut(s) 19, 22, 39, 44, 103, 106
GlaI GCGC 2 cut(s) 37, 42
GluI GCNGC 6 cut(s) 19, 22, 39, 44, 103, 106
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 13, 121
HgaI GACGC 1 cut(s) 153
HhaI GCGC 2 cut(s) 38, 43
Hin1I GRCGYC 2 cut(s) 50, 145
Hin6I GCGC 2 cut(s) 36, 41
HinP1I GCGC 2 cut(s) 36, 41
HpaII CCGG 2 cut(s) 13, 121
Hpy188I TCNGA 3 cut(s) 128, 168, 176
Hpy188III TCNNGA 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 98, 194
HpyCH4IV ACGT 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 50, 145
HspAI GCGC 2 cut(s) 36, 41
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 2 cut(s) 77, 171
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 26, 134, 182
Lsp1109I GCAGC 2 cut(s) 30, 89
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 50
MalI GATC 2 cut(s) 79, 173
MbiI CCGCTC 1 cut(s) 18
MboI GATC 2 cut(s) 77, 171
MboII GAAGA 1 cut(s) 60
MspI CCGG 2 cut(s) 13, 121
MspR9I CCNGG 3 cut(s) 13, 121, 122
MteI GCGCNGCGC 1 cut(s) 39
MvnI CGCG 1 cut(s) 38
NciI CCSGG 3 cut(s) 13, 121, 122
NdeII GATC 2 cut(s) 77, 171
NlaIV GGNNCC 2 cut(s) 11, 119
PkrI GCNGC 6 cut(s) 20, 23, 40, 45, 104, 107
PpuMI RGGWCCY 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 11, 119
PspPI GGNCC 2 cut(s) 9, 117
PspPPI RGGWCCY 1 cut(s) 9
SatI GCNGC 6 cut(s) 19, 22, 39, 44, 103, 106
Sau3AI GATC 2 cut(s) 77, 171
Sau96I GGNCC 2 cut(s) 9, 117
ScrFI CCNGG 3 cut(s) 13, 121, 122
SetI ASST 1 cut(s) 53
SfaNI GCATC 1 cut(s) 69
SinI GGWCC 2 cut(s) 9, 117
SmaI CCCGGG 1 cut(s) 122
SsiI CCGC 4 cut(s) 18, 21, 38, 105
StyD4I CCNGG 3 cut(s) 11, 119, 120
TaaI ACNGT 2 cut(s) 98, 194
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 31, 206
TauI GCSGC 4 cut(s) 21, 24, 41, 108
TseI GCWGC 2 cut(s) 43, 102
TspGWI ACGGA 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 9, 117
XmaI CCCGGG 1 cut(s) 120
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.