Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8040198.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

153 .. 509

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8040198.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtttggacgtgtcttgcaagatgtagactctgtcaagcgcagtgccctgatcatcaagcaaataatgcgtcagattattacttcgctcaagaaaatccatgacacaggcattgttcaccgggatataaagccagcaaacttagtagtgacaaaaaagggaaagatcaagctcatagattttggggcagctactgacctccggattggaaagaactttgttccaaaccgaggcctgcttgaccctgacttctgtcctcctgaactgtacgtgctcccagaggaaacaccggtgcctcctccagaacctattgctgcagttctttctccgattctttggcaggtactaaagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010109 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042548 GO:0042549 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043467 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

9.56

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	201
AfaI	GTAC	2 cut(s)	269, 345
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	10
AgeI	ACCGGT	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	11
AluBI	AGCT	2 cut(s)	172, 191
AluI	AGCT	2 cut(s)	172, 191
Alw21I	GWGCWC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	188, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AsiGI	ACCGGT	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	49
BaeI	ACNNNNGTAYC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	200, 301
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	2 cut(s)	189, 315
BlsI	GCNGC	2 cut(s)	190, 316
Bme1390I	CCNGG	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	201, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	200, 301
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	292
BshTI	ACCGGT	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	121, 202, 290
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	49, 276
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	51, 165
BspANI	GGCC	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	51, 165
Bst4CI	ACNGT	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	135, 236
BstDEI	CTNAG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	54, 168
BstMBI	GATC	2 cut(s)	51, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	200, 301
BsuRI	GGCC	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	135, 236
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	289
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	268, 344
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	4 cut(s)	133, 172, 191, 234
CviKI_1	RGCY	4 cut(s)	133, 172, 191, 234
CviQI	GTAC	2 cut(s)	268, 344
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	53, 167
DpnII	GATC	2 cut(s)	51, 165
Eco147I	AGGCCT	1 cut(s)	234
FaeI	CATG	1 cut(s)	104
FaiI	YATR	3 cut(s)	102, 128, 176
FatI	CATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	189, 315
Fsp4HI	GCNGC	2 cut(s)	189, 315
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	189, 315
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	3 cut(s)	121, 202, 290
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	29, 331
HpaII	CCGG	3 cut(s)	121, 202, 290
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	28, 118
Hpy188I	TCNGA	2 cut(s)	75, 330
Hpy188III	TCNNGA	4 cut(s)	91, 202, 260, 302
Hpy8I	GTNNAC	2 cut(s)	28, 118
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	2 cut(s)	10, 270
HpyCH4V	TGCA	2 cut(s)	19, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	2 cut(s)	10, 270
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	51, 165
LmnI	GCTCC	1 cut(s)	279
Lsp1109I	GCAGC	2 cut(s)	200, 301
MaeII	ACGT	2 cut(s)	10, 270
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	53, 167
MboI	GATC	2 cut(s)	51, 165
MhlI	GDGCHC	2 cut(s)	49, 276
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	6 cut(s)	209, 224, 267, 274, 306, 309
MroI	TCCGGA	1 cut(s)	201
MspI	CCGG	3 cut(s)	121, 202, 290
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	51, 165
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	190, 316
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	269, 345
RsaNI	GTAC	2 cut(s)	268, 344
SatI	GCNGC	2 cut(s)	189, 315
Sau3AI	GATC	2 cut(s)	51, 165
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	49, 276
SetI	ASST	7 cut(s)	13, 174, 193, 201, 273, 310, 345
SfcI	CTRYAG	1 cut(s)	315
SgrAI	CRCCGGYG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	2 cut(s)	13, 273
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	188, 314
Tsp45I	GTSAC	1 cut(s)	148
TspRI	CASTG	1 cut(s)	49
Tth111I	GACNNNGTC	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.