Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055718.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 543

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055718.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

atgttggaaggtggtgccaagttccctggaattataggtctaaacaacaacgattatgatttgtctcaaggcttttaccacaaacttcatgagggtgagggtactaacatgtccactgacagtatgcaaactagcgttgatggaggctctgtcgccatgtctataggtaacagcagcgttgcttcaaataccaatgattcccacactcgcatcttgaaccaccaaggcctgcggcgacgcagaaatgacaacgactctgttgctgcacaaagtgttcatcgcggaagagtcacacatgcactcagtgatgatcaacttgcccgagctctaatggacagcaattctgtcacagaggggcttgagaattatgaggcatggacaattgacttaagaaagctaaacatgggtgaagcttttgcgcaaggtgcttttgggaagctatatagaggtacttacaatggcgaggatgttgctatcaaaattttggagaggcctgagaatgacccagaaaaggctcagataatggagcaacagtttcaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.83

Weight (kDa)

5.18

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	232, 282
AcsI	RAATTY	1 cut(s)	480
AdeI	CACNNNGTG	2 cut(s)	272, 305
AfaI	GTAC	2 cut(s)	103, 451
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflII	CTTAAG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	186, 217, 539
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	326, 397, 413, 439
AluI	AGCT	4 cut(s)	326, 397, 413, 439
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	226, 491
ApeKI	GCWGC	2 cut(s)	174, 263
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	107, 419
AvaI	CYCGRG	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	186, 250
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 452, 486
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	388
BisI	GCNGC	3 cut(s)	175, 233, 264
BlsI	GCNGC	3 cut(s)	176, 234, 265
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	51, 380
BsaJI	CCNNGG	2 cut(s)	25, 223
BsaXI	ACNNNNNCTCC	3 cut(s)	135, 165, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	25, 223
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	316, 486, 530
BseXI	GCAGC	2 cut(s)	186, 250
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	228, 493
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	228, 493
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	232, 282
BspANI	GGCC	2 cut(s)	228, 493
BspCNI	CTCAG	3 cut(s)	315, 487, 529
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	25, 223
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	122, 534
Bst6I	CTCTTC	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	3 cut(s)	302, 495, 516
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	112, 299
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	186, 250
BsuRI	GGCC	2 cut(s)	228, 493
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	114, 310
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	421
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	102, 450
CviAII	CATG	6 cut(s)	89, 109, 157, 296, 375, 403
CviQI	GTAC	2 cut(s)	102, 450
DdeI	CTNAG	3 cut(s)	302, 495, 516
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
DraIII	CACNNNGTG	2 cut(s)	272, 305
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	2 cut(s)	228, 493
Eco24I	GRGCYC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	6 cut(s)	92, 112, 160, 299, 378, 406
FatI	CATG	6 cut(s)	88, 108, 156, 295, 374, 402
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	175, 233, 264
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	3 cut(s)	175, 233, 264
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	175, 233, 264
HaeIII	GGCC	2 cut(s)	228, 493
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	6 cut(s)	92, 112, 160, 299, 378, 406
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	197, 254, 288
HphI	GGTGA	2 cut(s)	107, 419
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	2 cut(s)	89, 214
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	122, 534
HpyCH4V	TGCA	3 cut(s)	127, 266, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	302, 495, 516
Hsp92II	CATG	6 cut(s)	92, 112, 160, 299, 378, 406
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	5 cut(s)	12, 39, 242, 507, 519
Lsp1109I	GCAGC	2 cut(s)	186, 250
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	167, 289, 346
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	297
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	5 cut(s)	30, 340, 364, 381, 480
MlyI	GAGTC	2 cut(s)	248, 297
MnlI	CCTC	8 cut(s)	85, 91, 137, 346, 364, 440, 457, 483
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	6 cut(s)	92, 112, 160, 299, 378, 406
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	289, 346
NsbI	TGCGCA	1 cut(s)	420
NspI	RCATGY	2 cut(s)	112, 299
PagI	TCATGA	1 cut(s)	88
PceI	AGGCCT	2 cut(s)	228, 493
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	176, 234, 265
PleI	GAGTC	2 cut(s)	248, 296
PpsI	GAGTC	2 cut(s)	248, 296
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	103, 451
RsaNI	GTAC	2 cut(s)	102, 450
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	3 cut(s)	175, 233, 264
Sau3AI	GATC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	248, 297
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	9 cut(s)	13, 40, 169, 328, 399, 415, 427, 441, 451
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	66, 359, 388
SmoI	CTYRAG	3 cut(s)	66, 359, 388
Sse9I	AATT	5 cut(s)	30, 340, 364, 381, 480
SseBI	AGGCCT	2 cut(s)	228, 493
SsiI	CCGC	2 cut(s)	232, 282
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	2 cut(s)	228, 493
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	122, 534
TasI	AATT	5 cut(s)	30, 340, 364, 381, 480
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	121, 310
TseFI	GTSAC	2 cut(s)	289, 346
TseI	GCWGC	2 cut(s)	174, 263
Tsp45I	GTSAC	2 cut(s)	289, 346
TspDTI	ATGAA	2 cut(s)	77, 266
TspRI	CASTG	2 cut(s)	121, 310
Vha464I	CTTAAG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	112, 299
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.