Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8075778.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58 .. 580

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8075778.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 419 bp

atgcagtcgcctaggtttcaggcaatactgcgagttacgagtggacgaaagaagagaacacctgacatcaagagtttctctcatgagctaaattccaaaggggttagaccatttccggtgtggaagtcccgtgcattcgggcatatggaggtgacattaccttcacctgtggcaagatttgagaggttgaaggatgaggttgatgttgatttgggtgcatttgcgggtgatttggtgggtattcttgaaaagtcttcagagtctcaccctgaatggaaagagaattttgaggatttgctagttattgcccggcagtgtgcaaagatgtctcctaacgaattttggatcaagtgtgaaggcattgtacagaagttggatgaccggcgtcaagagctaccaatgggggccctgaaacaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

8.97

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	91, 283, 338
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	385
AfaI	GTAC	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	190, 248
AluBI	AGCT	2 cut(s)	88, 394
AluI	AGCT	2 cut(s)	88, 394
Alw26I	GTCTC	2 cut(s)	267, 333
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	405
ApaI	GGGCCC	1 cut(s)	409
ApoI	RAATTY	3 cut(s)	91, 283, 338
AspA2I	CCTAGG	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	405, 406
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	4 cut(s)	156, 163, 239, 257
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	267, 333
BfaI	CTAG	2 cut(s)	12, 299
BlnI	CCTAGG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	405, 406
BmiI	GGNNCC	2 cut(s)	406, 407
BmrFI	CCNGG	1 cut(s)	310
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	199, 382
BseSI	GKGCMC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	3 cut(s)	116, 310, 382
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	267, 333
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	407
Bsp120I	GGGCCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	406, 407
BspPI	GGATC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	385
BstAUI	TGTACA	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	199, 382
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	267, 333
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	199, 382
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	405, 406
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	3 cut(s)	88, 394, 407
CviKI_1	RGCY	3 cut(s)	88, 394, 407
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	2 cut(s)	405, 406
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 144, 146
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	144
FokI	GGATG	2 cut(s)	206, 389
FriOI	GRGCYC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	12, 299
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	116, 310, 382
HgaI	GACGC	1 cut(s)	374
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	3 cut(s)	116, 310, 382
HphI	GGTGA	4 cut(s)	156, 163, 239, 257
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	4 cut(s)	70, 83, 245, 389
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	171, 184, 350
HpyCH4V	TGCA	4 cut(s)	4, 134, 218, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	345
LpnPI	CCDG	7 cut(s)	5, 75, 129, 180, 282, 323, 395
MaeI	CTAG	2 cut(s)	12, 299
MaeIII	GTNAC	2 cut(s)	34, 151
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	64, 246
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	3 cut(s)	91, 283, 338
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	142, 177, 190, 283
MspI	CCGG	3 cut(s)	116, 310, 382
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	2 cut(s)	406, 407
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	82
PctI	GAATGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	406, 407
PspOMI	GGGCCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	405, 406
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	405, 406
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	9 cut(s)	17, 64, 90, 153, 163, 169, 188, 201, 396
Sse9I	AATT	3 cut(s)	91, 283, 338
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	12, 299
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	11
TasI	AATT	3 cut(s)	91, 283, 338
TatI	WGTACW	1 cut(s)	364
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	3 cut(s)	91, 283, 338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	2 cut(s)	12, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.