Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081802.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 372

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081802.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atggatcaagcactcacaacaggctttcgtttctacccaactgaagaagaactcgtctccttttacctcctcaacaagctcgaatccaagcaccaagacagcattcgccgcgtcatcccagaccttgacatttacagcaccgagccatgggagctcccaaattatgcagcggagctgtgccgtggagacaccgagcagtggttcttctttacgccgaggcagcaacgagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

77

Amino Acids

9.31

Weight (kDa)

4.65

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	109, 170
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	147, 198
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	3 cut(s)	79, 154, 175
AluI	AGCT	3 cut(s)	79, 154, 175
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	61, 180
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	167, 220
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	61, 180
BisI	GCNGC	3 cut(s)	109, 168, 221
BlsI	GCNGC	3 cut(s)	110, 169, 222
BsaJI	CCNNGG	3 cut(s)	146, 181, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 198
BseDI	CCNNGG	3 cut(s)	146, 181, 215
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	147, 198
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	147, 198
BsmAI	GTCTC	2 cut(s)	61, 180
BsmBI	CGTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	2 cut(s)	109, 170
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	146, 181, 215
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	146
BstDSI	CCRYGG	2 cut(s)	146, 181
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	61, 180
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 151, 220
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	179
BtgI	CCRYGG	2 cut(s)	146, 181
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	5 cut(s)	24, 79, 145, 154, 175
CviKI_1	RGCY	5 cut(s)	24, 79, 145, 154, 175
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	150
FaiI	YATR	2 cut(s)	148, 165
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	109, 168, 221
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	109, 168, 221
GluI	GCNGC	3 cut(s)	109, 168, 221
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	150
HinfI	GANTC	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 151, 220
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	151, 159, 172
LpnPI	CCDG	2 cut(s)	6, 132
Lsp1109I	GCAGC	1 cut(s)	179
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	56, 59, 196
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	3 cut(s)	77, 80, 210
MspA1I	CMGCKG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	102
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	108, 151, 220
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	150
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	110, 169, 222
Psp124BI	GAGCTC	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	3 cut(s)	109, 168, 221
Sau3AI	GATC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	5 cut(s)	69, 81, 126, 156, 177
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	109, 170
SstI	GAGCTC	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	146
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	167, 220
TspRI	CASTG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.