Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8088292.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 446

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8088292.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggctggaaacgaagaagaacaccggcagccgccgtccacgtcgtcatctcgtcctccgcatcccacgattactctgccgccgcggactagttttgagaccatgtttaacaacaactccggaacaggcgggaatactggggcgggcttggggttcagtccggggccgatgactctggtttcgagcttcttctctgatggggaagactgcaagtcgttttctcagctgctggctggagccatgctgtctccggcggacagggcggcgtttccgccgcttgaagacaggaattccggggatgacagcagtgatttccggttcaagaatggaacggcgggtatgtcgattggaccgctgtcgccgatgtttccggctggtttcctcgactcgccgggaggactattctcgcccggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043901 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1900150 GO:1900424 GO:1900425 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

139

Amino Acids

14.45

Weight (kDa)

4.64

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	281, 322
AhdI	GACNNNNNGTC	1 cut(s)	211
AhlI	ACTAGT	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	42
AluBI	AGCT	2 cut(s)	186, 226
AluI	AGCT	2 cut(s)	186, 226
Alw26I	GTCTC	2 cut(s)	92, 252
AlwNI	CAGNNNCTG	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	28, 226
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspS9I	GGNCC	2 cut(s)	164, 350
AsuC2I	CCSGG	4 cut(s)	162, 295, 393, 411
AvaII	GGWCC	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	210, 288
BbvI	GCAGC	2 cut(s)	40, 213
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	19, 348
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	4 cut(s)	162, 295, 393, 411
BcoDI	GTCTC	2 cut(s)	92, 252
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	7 cut(s)	29, 32, 80, 83, 227, 264, 275
BlsI	GCNGC	7 cut(s)	30, 33, 81, 84, 228, 265, 276
Bme1390I	CCNGG	4 cut(s)	162, 295, 393, 411
Bme18I	GGWCC	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	164, 350
BmiI	GGNNCC	2 cut(s)	165, 238
BmrFI	CCNGG	4 cut(s)	162, 295, 393, 411
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	210, 288
BpmI	CTGGAG	1 cut(s)	255
BpuMI	CCSGG	4 cut(s)	162, 295, 393, 411
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	83, 161, 294
BsaWI	WCCGGW	2 cut(s)	119, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	83, 161, 294
BseGI	GGATG	2 cut(s)	61, 304
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	40, 213
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	9 cut(s)	25, 120, 161, 251, 294, 316, 371, 392, 411
BsmAI	GTCTC	2 cut(s)	92, 252
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	119
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	235
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	165, 238
BspTNI	GGTCTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	83, 161, 294
BstC8I	GCNNGC	2 cut(s)	145, 231
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	61, 304
BstFNI	CGCG	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	92, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	160, 293, 391, 409
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	40, 213
BstV2I	GAAGAC	2 cut(s)	210, 288
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	61, 304
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	145, 231
CaiI	CAGNNNCTG	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	164, 350
Cfr42I	CCGCGG	1 cut(s)	86
CviAII	CATG	2 cut(s)	103, 241
CviJI	RGCY	9 cut(s)	5, 31, 147, 166, 186, 226, 233, 239, 374
CviKI_1	RGCY	9 cut(s)	5, 31, 147, 166, 186, 226, 233, 239, 374
DdeI	CTNAG	1 cut(s)	222
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EciI	GGCGGA	2 cut(s)	261, 269
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	289
FaeI	CATG	2 cut(s)	106, 244
FaiI	YATR	3 cut(s)	104, 242, 341
FatI	CATG	2 cut(s)	102, 240
FauI	CCCGC	3 cut(s)	122, 136, 328
Fnu4HI	GCNGC	7 cut(s)	29, 32, 80, 83, 227, 264, 275
FokI	GGATG	2 cut(s)	48, 311
Fsp4HI	GCNGC	7 cut(s)	29, 32, 80, 83, 227, 264, 275
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	7 cut(s)	29, 32, 80, 83, 227, 264, 275
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	9 cut(s)	25, 120, 161, 251, 294, 316, 371, 392, 411
Hin1II	CATG	2 cut(s)	106, 244
HinfI	GANTC	2 cut(s)	172, 386
HpaII	CCGG	9 cut(s)	25, 120, 161, 251, 294, 316, 371, 392, 411
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	120, 322
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	106, 244
Kpn2I	TCCGGA	1 cut(s)	119
KspI	CCGCGG	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	40, 213
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	41
MboII	GAAGA	5 cut(s)	26, 29, 181, 215, 293
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	166, 380
MnlI	CCTC	3 cut(s)	66, 389, 392
MroI	TCCGGA	1 cut(s)	119
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	3 cut(s)	85, 226, 355
MspI	CCGG	9 cut(s)	25, 120, 161, 251, 294, 316, 371, 392, 411
MspR9I	CCNGG	4 cut(s)	162, 295, 393, 411
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	4 cut(s)	162, 295, 393, 411
NlaIII	CATG	2 cut(s)	106, 244
NlaIV	GGNNCC	2 cut(s)	165, 238
PkrI	GCNGC	7 cut(s)	30, 33, 81, 84, 228, 265, 276
PleI	GAGTC	2 cut(s)	166, 380
PpsI	GAGTC	2 cut(s)	166, 380
PshAI	GACNNNNGTC	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	165, 238
PspPI	GGNCC	2 cut(s)	164, 350
PstNI	CAGNNNCTG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	226
SacII	CCGCGG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	7 cut(s)	29, 32, 80, 83, 227, 264, 275
Sau96I	GGNCC	2 cut(s)	164, 350
SchI	GAGTC	2 cut(s)	166, 380
ScrFI	CCNGG	4 cut(s)	162, 295, 393, 411
SetI	ASST	3 cut(s)	44, 188, 228
SfaNI	GCATC	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	350
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	160, 293, 391, 409
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	182, 344, 384
TasI	AATT	1 cut(s)	289
TauI	GCSGC	5 cut(s)	34, 82, 85, 266, 277
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	28, 226
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	289
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.