Rmu_co8094062.1_g000001

Protein kinase and PP2C-like domain-containing

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8094062.1
N/A
Physical Location & Seq
Forward (+)
1 .. 595
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8094062.1_g000001.1.cds

Sequence Viewer

Length: 595 bp
tctattagcagtccaactgatgctttagtggaagcattcatcaagacagatgttgcatttagagatgaacttgatttttgtcgtaaatccaagagagtcatccagaaggattggcatcctggttgcactgcagctgctgctcttattgttaaaaacaagctttttgtagccaatgctggtgattgcaggacgatattgtgtcgggctggcatccctgttctcctaagcaaggatcacgttgcaagctgtcttgaggagagagagcgggttattaatgcaggaggacaagtaaaatggcaagtcgatgattggcgggttggcctagctgctcttcaggtcactcgttccataggtgatgatgatctaaagcctgctgtaactgcagaacctgagataagtgagactattctatctgcagaagatgagtatttggttatggcaagtgatggactgtgggatgtcatgagcaatgcagaggttataagcataatcaaggacactgtgaaagagcctggaatgtgctctaagcgattggcaacagaagctgccgagcgtggcagcaaagacaacataacagtcattgttgtcttccttc

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

4.96

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 265
AciI CCGC 2 cut(s) 265, 313
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 229
AjnI CCWGG 2 cut(s) 118, 511
AluBI AGCT 5 cut(s) 134, 160, 246, 326, 545
AluI AGCT 5 cut(s) 134, 160, 246, 326, 545
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 240
AlwNI CAGNNNCTG 3 cut(s) 137, 389, 545
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 6 cut(s) 131, 134, 137, 326, 545, 558
AseI ATTAAT 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 191, 365
BbsI GAAGAC 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 6 cut(s) 121, 124, 143, 313, 532, 570
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 2 cut(s) 120, 513
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 3 cut(s) 129, 381, 414
BisI GCNGC 6 cut(s) 132, 135, 138, 327, 546, 559
BlsI GCNGC 6 cut(s) 133, 136, 139, 328, 547, 560
Bme1390I CCNGG 2 cut(s) 120, 513
BmrFI CCNGG 2 cut(s) 120, 513
BmsI GCATC 3 cut(s) 10, 124, 219
BpiI GAAGAC 1 cut(s) 580
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 272
BsaBI GATNNNNATC 2 cut(s) 114, 360
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 475
Bse8I GATNNNNATC 2 cut(s) 114, 360
BseBI CCWGG 2 cut(s) 120, 513
BseGI GGATG 4 cut(s) 99, 115, 210, 463
BseJI GATNNNNATC 2 cut(s) 114, 360
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 6 cut(s) 121, 124, 143, 313, 532, 570
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 232, 361
BspACI CCGC 2 cut(s) 265, 313
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 462
BspMAI CTGCAG 3 cut(s) 133, 385, 418
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 475
BssMI GATC 2 cut(s) 232, 361
Bst2UI CCWGG 2 cut(s) 120, 513
Bst4CI ACNGT 3 cut(s) 453, 502, 577
Bst6I CTCTTC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 208, 244, 372
BstDEI CTNAG 3 cut(s) 224, 390, 525
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 99, 115, 210, 463
BstKTI GATC 2 cut(s) 235, 364
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 232, 361
BstMWI GCNNNNNNNGC 3 cut(s) 137, 380, 542
BstNI CCWGG 2 cut(s) 120, 513
BstSCI CCNGG 2 cut(s) 118, 511
BstSFI CTRYAG 3 cut(s) 129, 381, 414
BstV1I GCAGC 6 cut(s) 121, 124, 143, 313, 532, 570
BstV2I GAAGAC 1 cut(s) 580
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 4 cut(s) 99, 115, 210, 463
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 498
Cac8I GCNNGC 3 cut(s) 208, 244, 372
CaiI CAGNNNCTG 3 cut(s) 137, 389, 545
CciI TCATGA 1 cut(s) 462
CviAII CATG 1 cut(s) 463
DdeI CTNAG 3 cut(s) 224, 390, 525
DpnI GATC 2 cut(s) 234, 363
DpnII GATC 2 cut(s) 232, 361
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 118, 511
FaeI CATG 1 cut(s) 466
FaiI YATR 6 cut(s) 350, 437, 464, 482, 488, 572
FatI CATG 1 cut(s) 462
FauI CCCGC 2 cut(s) 258, 306
Fnu4HI GCNGC 6 cut(s) 132, 135, 138, 327, 546, 559
FokI GGATG 4 cut(s) 86, 102, 197, 470
Fsp4HI GCNGC 6 cut(s) 132, 135, 138, 327, 546, 559
FspBI CTAG 1 cut(s) 323
GluI GCNGC 6 cut(s) 132, 135, 138, 327, 546, 559
HaeIII GGCC 1 cut(s) 321
Hin1II CATG 1 cut(s) 466
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 96
HphI GGTGA 2 cut(s) 191, 365
Hpy188III TCNNGA 4 cut(s) 43, 103, 251, 463
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 3 cut(s) 453, 502, 577
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 9 cut(s) 56, 126, 131, 186, 242, 278, 383, 416, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 380, 542
HpyF3I CTNAG 3 cut(s) 224, 390, 525
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 466
Kzo9I GATC 2 cut(s) 232, 361
LguI GCTCTTC 1 cut(s) 336
Lsp1109I GCAGC 6 cut(s) 121, 124, 143, 313, 532, 570
LweI GCATC 3 cut(s) 10, 124, 219
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 337, 376
MalI GATC 2 cut(s) 234, 363
MbiI CCGCTC 1 cut(s) 265
MboI GATC 2 cut(s) 232, 361
MboII GAAGA 3 cut(s) 323, 431, 580
MhlI GDGCHC 1 cut(s) 524
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 3 cut(s) 247, 275, 469
MseI TTAA 2 cut(s) 150, 273
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 120, 513
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 2 cut(s) 120, 513
MwoI GCNNNNNNNGC 3 cut(s) 137, 380, 542
NdeII GATC 2 cut(s) 232, 361
NlaIII CATG 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 337
PagI TCATGA 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 336
PctI GAATGC 1 cut(s) 35
PkrI GCNGC 6 cut(s) 133, 136, 139, 328, 547, 560
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 273
PsiI TTATAA 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 118, 511
PspGI CCWGG 2 cut(s) 118, 511
PstI CTGCAG 3 cut(s) 133, 385, 418
PstNI CAGNNNCTG 3 cut(s) 137, 389, 545
PvuII CAGCTG 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 150, 273
SatI GCNGC 6 cut(s) 132, 135, 138, 327, 546, 559
Sau3AI GATC 2 cut(s) 232, 361
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 120, 513
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 3 cut(s) 10, 124, 219
SfcI CTRYAG 3 cut(s) 129, 381, 414
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SsiI CCGC 2 cut(s) 265, 313
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 118, 511
TaaI ACNGT 3 cut(s) 453, 502, 577
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 303
Tru1I TTAA 2 cut(s) 150, 273
Tru9I TTAA 2 cut(s) 150, 273
TscAI CASTG 2 cut(s) 133, 505
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 6 cut(s) 131, 134, 137, 326, 545, 558
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 28, 81
TspRI CASTG 2 cut(s) 133, 505
VspI ATTAAT 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 227
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.