Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8097936.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24 .. 539

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8097936.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggaggagcatgtacctcaacaccacggggaggtggttgaagttcatgtgccaagctccaatagtagaagtgtaggtagcacttctgcgcaggccgcgacgttgaggtcggccagtagcaagaaatctggggattccaagaagggttctcatagcgggaagaatgcagggaataatgagttgttgatggtgaatgaccagagaggcacgtttgggttgccagatttgatgaaagccgcggcggaggttttggggaatggaggattggggtcagcttacaaggctgtgatgggtaatgggttgtctgtggtagtgaagaggatgagggacatgaatagactagggagagatgggtttgatgctgagatgagaaggtttggaagattgagtcataggaatatcttgactcccttggcttaccattataggagagaagagaagctgttgatttcagactacattcctaaaggcagcttgttatatgttttgcatggtaaagggactttccaaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

9.88

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
Acc16I	TGCGCA	1 cut(s)	90
AccII	CGCG	2 cut(s)	98, 239
AciI	CCGC	5 cut(s)	96, 156, 237, 239, 242
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	57, 275, 442, 474
AluI	AGCT	4 cut(s)	57, 275, 442, 474
AoxI	GGCC	2 cut(s)	93, 111
ApeKI	GCWGC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	181, 283, 344
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	96, 237, 240, 472
BlsI	GCNGC	4 cut(s)	97, 238, 241, 473
BmsI	GCATC	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	25, 237, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	25, 237, 411
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	98, 239
BshFI	GGCC	2 cut(s)	95, 113
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	95, 113
BspACI	CCGC	5 cut(s)	96, 156, 237, 239, 242
BspANI	GGCC	2 cut(s)	95, 113
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	98, 239
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	25, 237, 411
BssT1I	CCWWGG	1 cut(s)	411
Bst6I	CTCTTC	2 cut(s)	311, 429
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	2 cut(s)	25, 237
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	98, 239
BstHHI	GCGC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 281
BstNSI	RCATGY	1 cut(s)	14
BstUI	CGCG	2 cut(s)	98, 239
BstV1I	GCAGC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	95, 113
BtgI	CCRYGG	2 cut(s)	25, 237
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	91
Cfr42I	CCGCGG	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	4 cut(s)	11, 47, 331, 491
CviJI	RGCY	9 cut(s)	57, 95, 113, 236, 275, 284, 416, 442, 474
CviKI_1	RGCY	9 cut(s)	57, 95, 113, 236, 275, 284, 416, 442, 474
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	311, 429
EarI	CTCTTC	2 cut(s)	311, 429
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	14, 50, 334, 494
FaiI	YATR	9 cut(s)	12, 48, 153, 332, 393, 426, 481, 483, 492
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	10, 46, 330, 490
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	96, 237, 240, 472
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	4 cut(s)	96, 237, 240, 472
FspBI	CTAG	1 cut(s)	341
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	96, 237, 240, 472
HaeIII	GGCC	2 cut(s)	95, 113
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	14, 50, 334, 494
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	3 cut(s)	134, 388, 406
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	136, 366
HpyCH4IV	ACGT	2 cut(s)	101, 209
HpyCH4V	TGCA	2 cut(s)	167, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 281
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	101, 209
Hsp92II	CATG	4 cut(s)	14, 50, 334, 494
HspAI	GCGC	1 cut(s)	89
KspI	CCGCGG	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	7, 62
LpnPI	CCDG	6 cut(s)	77, 114, 127, 153, 212, 234
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	101, 209
MboII	GAAGA	4 cut(s)	172, 328, 393, 446
MlyI	GAGTC	2 cut(s)	397, 400
MnlI	CCTC	8 cut(s)	25, 27, 99, 197, 238, 254, 312, 318
MseI	TTAA	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	169
MvnI	CGCG	2 cut(s)	98, 239
MwoI	GCNNNNNNNGC	2 cut(s)	95, 281
NlaIII	CATG	4 cut(s)	14, 50, 334, 494
NsbI	TGCGCA	1 cut(s)	90
NspI	RCATGY	1 cut(s)	14
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	97, 238, 241, 473
PleI	GAGTC	2 cut(s)	396, 400
PpsI	GAGTC	2 cut(s)	396, 400
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SacII	CCGCGG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	514
SatI	GCNGC	4 cut(s)	96, 237, 240, 472
SchI	GAGTC	2 cut(s)	397, 400
SfaNI	GCATC	1 cut(s)	349
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SsiI	CCGC	5 cut(s)	96, 156, 237, 239, 242
SspMI	CTAG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	2 cut(s)	104, 212
TauI	GCSGC	3 cut(s)	98, 239, 242
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TseI	GCWGC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	35, 245, 347
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.