Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8098876.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 287

Gene Structure 286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8098876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

atgcagttggaggccttggttcatcccttttttgatgagttacgggaccctaatacccgcctgccaaatggacgtttccttcccccattgttcaattttaaggctcatgaactcaagggagtacctgcagagatgattgttaagctgataccagagcatgcaagaaaacagtgtgccttcctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

61

Amino Acids

7.08

Weight (kDa)

7.98

Isoelectric Point (pI)

19.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AciI	CCGC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	47, 48
BpuEI	CTTGAG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	47, 48
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	62, 159
BstF5I	GGATG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	62, 159
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	2 cut(s)	107, 158
CviJI	RGCY	3 cut(s)	14, 104, 145
CviKI_1	RGCY	3 cut(s)	14, 104, 145
CviQI	GTAC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	110, 161
FaiI	YATR	2 cut(s)	108, 159
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	106, 157
FauI	CCCGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	110, 161
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	4, 128, 161
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	110, 161
KflI	GGGWCCC	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	74, 138, 165
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	39
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	2 cut(s)	99, 141
NlaIII	CATG	2 cut(s)	110, 161
NlaIV	GGNNCC	2 cut(s)	47, 48
NspI	RCATGY	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	47, 48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	99, 141
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	3 cut(s)	76, 127, 147
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	94
SseBI	AGGCCT	1 cut(s)	14
SsiI	CCGC	1 cut(s)	58
StuI	AGGCCT	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	76
TasI	AATT	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	99, 141
Tru9I	TTAA	2 cut(s)	99, 141
TscAI	CASTG	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	11, 123
TspRI	CASTG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.