Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8101768.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 587

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8101768.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 586 bp

atgtttgaattcgacatcagcaacaaccgattcgtcggcgagtttccgatggtcgttctagaatggccggggattaagtaccttgacatcagatacaacgagttcgaaggggagttgcctccgaatctgttctggaagccattcgatgccattttcttgaaccacaacaggtttacatctaatatcccagagacgctaggaaactcgactgtaacggttgtgacttttggttttaacaaattcagtgggtgcatacctcgcagcattgggcagatgcctaatgtggaggagttgatgttcatgaacaacaatatgagtgggtgctttcctgaggagatagggaatctagggaatgtgactgttctggatgtgagcaataacgggctcatagggccattgccgaagagtcttgtgaacctgaagaccattgaggttttggatattggtttcaatatgttgacagggtttgtgtcggagaagatatgcagcttgcccaagttggaaaattttacgtttgcttacaactattttagtggggagcatcagaaatgtttgcctaatccaaacgcaaaattggcattgaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005198 GO:0005199 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

195

Amino Acids

22.01

Weight (kDa)

4.83

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	3 cut(s)	8, 239, 505
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	8, 160, 451, 583
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	65, 392
ApeKI	GCWGC	2 cut(s)	261, 486
ApoI	RAATTY	3 cut(s)	8, 239, 505
Asp700I	GAANNNNTTC	2 cut(s)	128, 140
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	273, 498
BccI	CCATC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	3 cut(s)	59, 197, 347
BisI	GCNGC	2 cut(s)	262, 487
BlsI	GCNGC	2 cut(s)	263, 488
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	3 cut(s)	136, 264, 550
BpiI	GAAGAC	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	302, 347
BseXI	GCAGC	2 cut(s)	273, 498
BshFI	GGCC	2 cut(s)	67, 394
BsiSI	CCGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	67, 394
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	67, 394
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	211, 217, 361
Bst6I	CTCTTC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 391, 575
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	273, 498
BstV2I	GAAGAC	1 cut(s)	428
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	67, 394
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	491
CciI	TCATGA	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	392
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	4 cut(s)	226, 261, 298, 333
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	5 cut(s)	67, 139, 385, 394, 489
CviKI_1	RGCY	5 cut(s)	67, 139, 385, 394, 489
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	304
FaiI	YATR	6 cut(s)	254, 302, 314, 389, 455, 484
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	262, 487
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	262, 487
FspBI	CTAG	3 cut(s)	59, 197, 347
GluI	GCNGC	2 cut(s)	262, 487
HaeIII	GGCC	2 cut(s)	67, 394
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	30, 124, 343, 406
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	174, 415, 459
Hpy188I	TCNGA	5 cut(s)	48, 92, 123, 475, 546
Hpy188III	TCNNGA	6 cut(s)	59, 133, 157, 301, 329, 365
Hpy8I	GTNNAC	3 cut(s)	174, 415, 459
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	3 cut(s)	211, 217, 361
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	2 cut(s)	252, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 391, 575
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	8 cut(s)	81, 118, 154, 201, 342, 350, 431, 447
Lsp1109I	GCAGC	2 cut(s)	273, 498
LweI	GCATC	3 cut(s)	136, 264, 550
MaeI	CTAG	3 cut(s)	59, 197, 347
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	3 cut(s)	211, 220, 355
MboII	GAAGA	3 cut(s)	415, 433, 490
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	4 cut(s)	8, 239, 505, 572
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	453, 480
MnlI	CCTC	5 cut(s)	129, 267, 280, 325, 424
MroXI	GAANNNNTTC	2 cut(s)	128, 140
MseI	TTAA	2 cut(s)	75, 234
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	258, 391, 575
NciI	CCSGG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	220, 355
NspV	TTCGAA	1 cut(s)	105
PagI	TCATGA	1 cut(s)	300
PdmI	GAANNNNTTC	2 cut(s)	128, 140
PfeI	GAWTC	3 cut(s)	30, 124, 343
PkrI	GCNGC	2 cut(s)	263, 488
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	75, 234
SatI	GCNGC	2 cut(s)	262, 487
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	84, 173, 259, 420, 435, 491, 515
SfaNI	GCATC	3 cut(s)	136, 264, 550
SfuI	TTCGAA	1 cut(s)	105
Sse9I	AATT	4 cut(s)	8, 239, 505, 572
SspMI	CTAG	3 cut(s)	59, 197, 347
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	3 cut(s)	211, 217, 361
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	4 cut(s)	12, 105, 144, 206
TasI	AATT	4 cut(s)	8, 239, 505, 572
TfiI	GAWTC	3 cut(s)	30, 124, 343
Tru1I	TTAA	2 cut(s)	75, 234
Tru9I	TTAA	2 cut(s)	75, 234
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	220, 355
TseI	GCWGC	2 cut(s)	261, 486
Tsp45I	GTSAC	2 cut(s)	220, 355
TspDTI	ATGAA	2 cut(s)	289, 317
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	3 cut(s)	8, 239, 505
XbaI	TCTAGA	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmnI	GAANNNNTTC	2 cut(s)	128, 140
XspI	CTAG	3 cut(s)	59, 197, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.