Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8108656.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 573

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8108656.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggcgtgctctgcccaaatcaacgtcctgggcactcccccgggtgcatcactcccaaggacgctgtttttaggtcagagattgggacaagcggcgccgttgcggggcttcgtcaccctacgatccaacggcgctgctcgaagggcgggaccgctccgcatagtaaacgagaaagttgtggggatcgatttggggacgactaactcggccgttggtgctatggagggtggtaagcccaccatagtgaccaatgctgagggccagagaaccacgccgtccgtcgtcgcttacacgaagagcggcgataggctcgtcggtcagatcgcaaaacgacaggccgttgtgaacccggagaacaccttcttttcggtgaagaggtttattgggaggaagatgtctgaggttgacgaagagtctaagcaggtctcctacaaggttgttagggatgagaatgggaatgttaagcttgattgtcctgctattggcaaacagttcgccgccgaagaaatctctgctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

173

Amino Acids

18.37

Weight (kDa)

9.87

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	2 cut(s)	154, 300
AciI	CCGC	7 cut(s)	92, 103, 146, 152, 157, 300, 498
AclWI	GGATC	2 cut(s)	117, 191
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	104, 482
AhdI	GACNNNNNGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	27
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	117, 191
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	3 cut(s)	207, 259, 336
ApeKI	GCWGC	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	97, 134
AspS9I	GGNCC	2 cut(s)	149, 259
AsuC2I	CCSGG	3 cut(s)	41, 42, 350
AsuHPI	GGTGA	2 cut(s)	106, 382
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	5 cut(s)	82, 145, 194, 259, 323
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	3 cut(s)	41, 42, 350
BcoDI	GTCTC	1 cut(s)	430
BfoI	RGCGCY	2 cut(s)	98, 135
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	93, 135, 301, 498
BlsI	GCNGC	4 cut(s)	94, 136, 302, 499
Bme1390I	CCNGG	4 cut(s)	29, 41, 42, 350
Bme18I	GGWCC	1 cut(s)	149
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	149, 259
BmiI	GGNNCC	2 cut(s)	96, 150
BmrFI	CCNGG	4 cut(s)	29, 41, 42, 350
BmsI	GCATC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	3 cut(s)	41, 42, 350
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	4 cut(s)	28, 39, 40, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 482
BseBI	CCWGG	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	28, 39, 40, 56
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	104, 482
BseMII	CTCAG	2 cut(s)	246, 390
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	209, 261, 338
BshNI	GGYRCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	41, 350
BslFI	GGGAC	3 cut(s)	99, 162, 208
BslI	CCNNNNNNNGG	2 cut(s)	104, 482
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	3 cut(s)	99, 162, 208
BsnI	GGCC	3 cut(s)	209, 261, 338
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	11, 35
Bsp143I	GATC	3 cut(s)	122, 183, 321
BspACI	CCGC	7 cut(s)	92, 103, 146, 152, 157, 300, 498
BspANI	GGCC	3 cut(s)	209, 261, 338
BspCNI	CTCAG	2 cut(s)	247, 391
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	96, 150
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	117, 191
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	430
BsrBI	CCGCTC	2 cut(s)	154, 300
BssECI	CCNNGG	4 cut(s)	28, 39, 40, 56
BssMI	GATC	3 cut(s)	122, 183, 321
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	3 cut(s)	290, 368, 405
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	255, 399, 417, 516
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	2 cut(s)	98, 135
BstHHI	GCGC	2 cut(s)	97, 134
BstKTI	GATC	3 cut(s)	125, 186, 324
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	3 cut(s)	122, 183, 321
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 143, 215
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	27, 39, 40, 348
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	121
BstZI	CGGCCG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	209, 261, 338
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	97, 134
Cfr13I	GGNCC	2 cut(s)	149, 259
Cfr9I	CCCGGG	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	70
CviJI	RGCY	7 cut(s)	108, 209, 235, 261, 310, 338, 466
CviKI_1	RGCY	7 cut(s)	108, 209, 235, 261, 310, 338, 466
DdeI	CTNAG	4 cut(s)	255, 399, 417, 516
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	3 cut(s)	124, 185, 323
DpnII	GATC	3 cut(s)	122, 183, 321
DriI	GACNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	290, 368, 405
Eam1105I	GACNNNNNGTC	1 cut(s)	412
EarI	CTCTTC	3 cut(s)	290, 368, 405
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	56
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	56
FaiI	YATR	3 cut(s)	161, 221, 242
FaqI	GGGAC	3 cut(s)	99, 162, 208
FauI	CCCGC	2 cut(s)	96, 139
Fnu4HI	GCNGC	4 cut(s)	93, 135, 301, 498
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	93, 135, 301, 498
GlaI	GCGC	2 cut(s)	96, 133
GluI	GCNGC	4 cut(s)	93, 135, 301, 498
HaeII	RGCGCY	2 cut(s)	98, 135
HaeIII	GGCC	3 cut(s)	209, 261, 338
HapII	CCGG	2 cut(s)	41, 350
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	2 cut(s)	97, 134
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	2 cut(s)	95, 132
HinP1I	GCGC	2 cut(s)	95, 132
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	2 cut(s)	41, 350
HphI	GGTGA	2 cut(s)	106, 382
Hpy166II	GTNNAC	3 cut(s)	166, 346, 406
Hpy188I	TCNGA	3 cut(s)	78, 321, 400
Hpy8I	GTNNAC	3 cut(s)	166, 346, 406
Hpy99I	CGWCG	3 cut(s)	284, 287, 317
HpyAV	CCTTC	2 cut(s)	135, 370
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 143, 215
HpyF3I	CTNAG	4 cut(s)	255, 399, 417, 516
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	2 cut(s)	95, 132
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	122, 183, 321
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	14, 41, 54, 275, 320, 363, 407, 489
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	56
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	112, 244
MalI	GATC	3 cut(s)	124, 185, 323
MbiI	CCGCTC	2 cut(s)	154, 300
MboI	GATC	3 cut(s)	122, 183, 321
MboII	GAAGA	5 cut(s)	307, 385, 403, 422, 515
MhlI	GDGCHC	2 cut(s)	11, 35
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	217, 250, 369, 381, 394
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	41, 350
MspR9I	CCNGG	4 cut(s)	29, 41, 42, 350
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	11, 143, 215
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	3 cut(s)	41, 42, 350
NdeII	GATC	3 cut(s)	122, 183, 321
NlaIV	GGNNCC	2 cut(s)	96, 150
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	2 cut(s)	112, 244
OliI	CACNNNNGTG	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	94, 136, 302, 499
PleI	GAGTC	1 cut(s)	421
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	96, 150
PspPI	GGNCC	2 cut(s)	149, 259
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	93, 135, 301, 498
Sau3AI	GATC	3 cut(s)	122, 183, 321
Sau96I	GGNCC	2 cut(s)	149, 259
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	4 cut(s)	29, 41, 42, 350
SduI	GDGCHC	2 cut(s)	11, 35
SetI	ASST	8 cut(s)	27, 76, 362, 380, 405, 426, 438, 468
SfaNI	GCATC	1 cut(s)	56
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	149
SmaI	CCCGGG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	242
SsiI	CCGC	7 cut(s)	92, 103, 146, 152, 157, 300, 498
SspDI	GGCGCC	1 cut(s)	94
StyD4I	CCNGG	4 cut(s)	27, 39, 40, 348
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	139, 186
TaqII	GACCGA	1 cut(s)	305
TauI	GCSGC	3 cut(s)	95, 303, 500
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	112, 244
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	112, 244
TspGWI	ACGGA	1 cut(s)	268
TspMI	CCCGGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.