Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8113040.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

65 .. 574

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8113040.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaactgtacggacacgactcgtctctgcacatcgttcctggccttcaagcccgaacccaatcagaccctgccggtgattcagtccatgttcgacgtgttaccggaagacgtcaccgtcggcgaccgtggctacgtcttcataaaaaagaactgttcttgcgcttctggggtcaacgagtatttgaccaacacgacgtttacggtgagatcgagtgaagggtatgtgtctgacgtggtgaatgaggcctatggtggcctgactttcctgcccaactcgacgaggcgtgccagaaacggcgccgttgtgtggctgaggctgctgtgcgggtgttcgagtgggctgtggaactatttgatgagctatgtgatgggggagggggatagcattgagtctttggcgagtcggttcggggttagtatggatagtattgagaaagttaatgggattgttgatcctgataatgtcactgttggtgctctgtattatatacctttgaattcaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.45

Weight (kDa)

4.65

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	499
AcyI	GRCGYC	2 cut(s)	111, 300
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	49, 499
AjiI	CACGTC	2 cut(s)	97, 235
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	42, 246, 256
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	499
AspLEI	GCGC	2 cut(s)	164, 302
AsuHPI	GGTGA	4 cut(s)	88, 106, 217, 250
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	114, 130
Bbv12I	GWGCWC	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	2 cut(s)	287, 313
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	41
BmgBI	CACGTC	2 cut(s)	97, 235
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	114, 130
Bpu10I	CCTNAGC	1 cut(s)	314
BsaHI	GRCGYC	2 cut(s)	111, 300
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	44, 248, 258
BshNI	GGYRCC	1 cut(s)	299
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	74, 104
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	44, 248, 258
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	209, 454
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	3 cut(s)	44, 248, 258
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	209, 454
BssNI	GRCGYC	2 cut(s)	111, 300
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	6 cut(s)	8, 118, 128, 155, 205, 472
BstACI	GRCGYC	2 cut(s)	111, 300
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	164, 302
BstKTI	GATC	2 cut(s)	212, 457
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	209, 454
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 319
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	2 cut(s)	114, 130
BsuRI	GGCC	3 cut(s)	44, 248, 258
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	2 cut(s)	97, 235
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	2 cut(s)	164, 302
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	44, 52, 132, 248, 258, 313, 319, 343, 363
CviKI_1	RGCY	9 cut(s)	44, 52, 132, 248, 258, 313, 319, 343, 363
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	314
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	2 cut(s)	211, 456
DpnII	GATC	2 cut(s)	209, 454
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eco147I	AGGCCT	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	91
FaiI	YATR	8 cut(s)	89, 143, 225, 252, 366, 422, 489, 491
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	320
GlaI	GCGC	2 cut(s)	163, 301
GluI	GCNGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	44, 248, 258
HapII	CCGG	2 cut(s)	74, 104
HhaI	GCGC	2 cut(s)	164, 302
Hin1I	GRCGYC	2 cut(s)	111, 300
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	2 cut(s)	162, 300
HinP1I	GCGC	2 cut(s)	162, 300
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	19, 79, 392, 403
HpaII	CCGG	2 cut(s)	74, 104
HphI	GGTGA	4 cut(s)	88, 106, 217, 250
Hpy166II	GTNNAC	2 cut(s)	175, 201
Hpy188I	TCNGA	2 cut(s)	66, 232
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	2 cut(s)	175, 201
Hpy99I	CGWCG	4 cut(s)	98, 122, 199, 283
HpyAV	CCTTC	2 cut(s)	55, 212
HpyCH4III	ACNGT	6 cut(s)	8, 118, 128, 155, 205, 472
HpyCH4IV	ACGT	5 cut(s)	96, 111, 135, 197, 234
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 319
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	5 cut(s)	96, 111, 135, 197, 234
Hsp92I	GRCGYC	2 cut(s)	111, 300
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	2 cut(s)	162, 300
KasI	GGCGCC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	209, 454
Lsp1109I	GCAGC	1 cut(s)	306
MaeII	ACGT	5 cut(s)	96, 111, 135, 197, 234
MaeIII	GTNAC	3 cut(s)	99, 112, 466
MalI	GATC	2 cut(s)	211, 456
MboI	GATC	2 cut(s)	209, 454
MboII	GAAGA	2 cut(s)	119, 130
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	1 cut(s)	499
Mly113I	GGCGCC	1 cut(s)	300
MlyI	GAGTC	3 cut(s)	13, 401, 412
MnlI	CCTC	4 cut(s)	238, 276, 309, 370
MseI	TTAA	1 cut(s)	441
MspI	CCGG	2 cut(s)	74, 104
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	129, 319
NarI	GGCGCC	1 cut(s)	300
NdeII	GATC	2 cut(s)	209, 454
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	112, 466
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	321
PleI	GAGTC	3 cut(s)	13, 400, 411
PluTI	GGCGCC	1 cut(s)	303
PpsI	GAGTC	3 cut(s)	13, 400, 411
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	209, 454
SchI	GAGTC	3 cut(s)	13, 401, 412
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	8 cut(s)	99, 114, 138, 200, 237, 365, 496, 508
SfoI	GGCGCC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	499
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	327
SspDI	GGCGCC	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	8, 118, 128, 155, 205, 472
TaiI	ACGT	5 cut(s)	99, 114, 138, 200, 237
TaqI	TCGA	4 cut(s)	93, 212, 278, 335
TasI	AATT	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	112, 466
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	2 cut(s)	112, 466
TspDTI	ATGAA	2 cut(s)	17, 130
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	499
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.