Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8129858.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

285 .. 599

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8129858.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggaggccttctgctcggaaaagggtcaactcttgacgtcggtagtggggcccaggctgatggacggccgcgcgattgaggaggaggaggtggcgggaatggtggacaggaggctgggatcggctggcgggtttgacgtggaggaagcgaggaccgtgctctcgctggccgccacgtgccttcggcagtctcctacgctcaggccatctgtcactcaaattttgcggacaatcaccgacagaatttcctccatcgcattcatactagaagaagatgaagagtcgcgccataaatcagtgaaatcacacacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

104

Amino Acids

11.42

Weight (kDa)

5.17

Isoelectric Point (pI)

71.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccII	CGCG	3 cut(s)	72, 74, 286
AciI	CCGC	5 cut(s)	70, 95, 129, 171, 226
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	2 cut(s)	67, 168
AcsI	RAATTY	2 cut(s)	219, 243
AcvI	CACGTG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	5 cut(s)	6, 50, 67, 168, 203
ApaI	GGGCCC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	219, 243
AspLEI	GCGC	2 cut(s)	74, 288
AspS9I	GGNCC	3 cut(s)	50, 51, 153
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	54
BbrPI	CACGTG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	3 cut(s)	55, 214, 260
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	70, 171
BlsI	GCNGC	2 cut(s)	71, 172
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	50, 51, 153
BmiI	GGNNCC	2 cut(s)	51, 52
BmrFI	CCNGG	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	214
BseRI	GAGGAG	3 cut(s)	95, 98, 101
BseSI	GKGCMC	1 cut(s)	54
BseX3I	CGGCCG	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	3 cut(s)	72, 74, 286
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	5 cut(s)	8, 52, 69, 170, 205
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	5 cut(s)	8, 52, 69, 170, 205
Bsp120I	GGGCCC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	54, 162
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	5 cut(s)	70, 95, 129, 171, 226
BspANI	GGCC	5 cut(s)	8, 52, 69, 170, 205
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	3 cut(s)	72, 74, 286
BspLI	GGNNCC	2 cut(s)	51, 52
BspPI	GGATC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	127, 168
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	3 cut(s)	72, 74, 286
BstHHI	GCGC	2 cut(s)	74, 288
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	119
BstMCI	CGRYCG	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	3 cut(s)	72, 74, 286
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	5 cut(s)	8, 52, 69, 170, 205
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	127, 168
CfoI	GCGC	2 cut(s)	74, 288
Cfr13I	GGNCC	3 cut(s)	50, 51, 153
CviJI	RGCY	8 cut(s)	8, 52, 58, 69, 115, 125, 170, 205
CviKI_1	RGCY	8 cut(s)	8, 52, 58, 69, 115, 125, 170, 205
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	67, 168
EagI	CGGCCG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	67
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	54
FaiI	YATR	2 cut(s)	263, 291
FauI	CCCGC	2 cut(s)	88, 122
Fnu4HI	GCNGC	2 cut(s)	70, 171
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	70, 171
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	2 cut(s)	73, 287
GluI	GCNGC	2 cut(s)	70, 171
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	5 cut(s)	8, 52, 69, 170, 205
HhaI	GCGC	2 cut(s)	74, 288
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	2 cut(s)	72, 286
HinP1I	GCGC	2 cut(s)	72, 286
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	29, 106
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	29, 106
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	19, 191
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	3 cut(s)	38, 138, 176
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	3 cut(s)	38, 138, 176
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	2 cut(s)	72, 286
Kzo9I	GATC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	40, 67, 94, 101, 111, 152, 187
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	3 cut(s)	38, 138, 176
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	281, 284, 290
MhlI	GDGCHC	2 cut(s)	54, 162
MluCI	AATT	2 cut(s)	219, 243
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	73, 76, 79, 82, 105, 136, 144, 259
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	55
MvnI	CGCG	3 cut(s)	72, 74, 286
NdeII	GATC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	51, 52
NmuCI	GTSAC	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	8
PctI	GAATGC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	71, 172
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	51, 52
PspOMI	GGGCCC	1 cut(s)	50
PspPI	GGNCC	3 cut(s)	50, 51, 153
SatI	GCNGC	2 cut(s)	70, 171
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	3 cut(s)	50, 51, 153
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	54, 162
SetI	ASST	4 cut(s)	41, 93, 141, 179
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	2 cut(s)	219, 243
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	5 cut(s)	70, 95, 129, 171, 226
SspMI	CTAG	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	3 cut(s)	41, 141, 179
TasI	AATT	2 cut(s)	219, 243
TauI	GCSGC	2 cut(s)	72, 173
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	250, 291
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	2 cut(s)	219, 243
XspI	CTAG	1 cut(s)	266
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.