Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8133832.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8133832.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atgtctatatcttctgttatccatggggactcacaactgaagtcaggaggaaggggagattctttggaaggtgatgcatctcagaatggtggttctgcacataattctcaaaatggaacaccaaattctcatgcagtgttgaaccccacaatggcaattgtgccaatgacagctgctggtgctcccattgccgtttctggtcctgcaacaaacctaaatattgggatggactattggggtgccccatcttctgccatgcctgcaatccgtgggaaggttcccactactccagtagctggtggactagttactccaggatctcgggatggtgctcaatcacagctttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

115

Amino Acids

11.31

Weight (kDa)

6.22

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	296
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	151, 274, 296
AgsI	TTSAA	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	173, 296, 343
AluI	AGCT	3 cut(s)	173, 296, 343
Alw21I	GWGCWC	2 cut(s)	184, 334
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	2 cut(s)	176, 296
Ama87I	CYCGRG	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	2 cut(s)	184, 334
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	3 cut(s)	220, 253, 320
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	241, 279
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	64, 86
BpmI	CTGGAG	2 cut(s)	273, 297
BsaJI	CCNNGG	2 cut(s)	22, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 274, 296
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	22, 268
BseGI	GGATG	2 cut(s)	231, 331
BseLI	CCNNNNNNNGG	3 cut(s)	151, 274, 296
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	184, 334
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	3 cut(s)	151, 274, 296
BsmFI	GGGAC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	184, 244, 334
Bsp143I	GATC	1 cut(s)	317
Bsp19I	CCATGG	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	241, 279
BspPI	GGATC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	22, 268
BssMI	GATC	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	2 cut(s)	22, 268
BstF5I	GGATG	2 cut(s)	231, 331
BstKTI	GATC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 260
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtgI	CCRYGG	2 cut(s)	22, 268
BtsCI	GGATG	2 cut(s)	231, 331
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	2 cut(s)	176, 296
Cfr13I	GGNCC	1 cut(s)	200
CviAII	CATG	3 cut(s)	23, 131, 256
CviJI	RGCY	3 cut(s)	173, 296, 343
CviKI_1	RGCY	3 cut(s)	173, 296, 343
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	26, 134, 259
FaiI	YATR	5 cut(s)	8, 24, 102, 132, 257
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	22, 130, 255
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	238, 338
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	273, 297
Hin1II	CATG	3 cut(s)	26, 134, 259
HinfI	GANTC	2 cut(s)	29, 59
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	45, 323
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	45, 62, 268
HpyCH4V	TGCA	5 cut(s)	77, 98, 134, 206, 263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 260
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	26, 134, 259
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	30, 162, 183, 216, 273, 282, 300, 303, 327
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	64, 86
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	3, 240
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	3 cut(s)	184, 244, 334
MluCI	AATT	3 cut(s)	103, 124, 156
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 260
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	26, 134, 259
NlaIV	GGNNCC	2 cut(s)	241, 279
NsiI	ATGCAT	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	241, 279
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	2 cut(s)	176, 296
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	173
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	3 cut(s)	184, 244, 334
SetI	ASST	6 cut(s)	73, 175, 216, 279, 298, 345
SfaNI	GCATC	2 cut(s)	64, 86
SinI	GGWCC	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	3 cut(s)	103, 124, 156
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	22
TasI	AATT	3 cut(s)	103, 124, 156
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	124
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.