Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8141236.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 616

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8141236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ctgactttaatcgcgtgtgttgtacagactggtgtcaacaagcttgccgaccttgttggggttacccttggtcccaaggggaggaatgttgttctagagagcaagtacggttcccccaaaattgttaacgatggtgtgaccgtggccaaagaggttgagttggaggaccctgttgagaacattggagctaagctggtaaggcaggcagctgccaagactaatgacttggctggtgacgggacaacaacttctgttgttcttgcacaaggtcttatagctgaaggtgtcaaggttgttgcagctggagcaaaccctgttctaatcacacgtggcattgagaagacaacaaaagctcttgtacgtgagcttaagttgatgtccaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

129

Amino Acids

13.33

Weight (kDa)

8.75

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	300
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	3 cut(s)	24, 107, 360
AfiI	CCNNNNNNNGG	2 cut(s)	58, 81
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	326
AluBI	AGCT	8 cut(s)	43, 188, 193, 209, 278, 302, 353, 367
AluI	AGCT	8 cut(s)	43, 188, 193, 209, 278, 302, 353, 367
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	206, 209, 299
AspS9I	GGNCC	2 cut(s)	71, 166
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	71, 166
BalI	TGGCCA	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	196, 218, 311
BccI	CCATC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	207, 210, 300
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	3 cut(s)	208, 211, 301
Bme18I	GGWCC	2 cut(s)	71, 166
BmgT120I	GGNCC	2 cut(s)	71, 166
BmiI	GGNNCC	3 cut(s)	73, 112, 168
BoxI	GACNNNNGTC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaAI	YACGTR	2 cut(s)	329, 362
BsaJI	CCNNGG	3 cut(s)	67, 75, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 81
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	3 cut(s)	67, 75, 141
BseLI	CCNNNNNNNGG	2 cut(s)	58, 81
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	196, 218, 311
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	57, 253
BslI	CCNNNNNNNGG	2 cut(s)	58, 81
BsmFI	GGGAC	2 cut(s)	57, 253
BsnI	GGCC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	22
Bsp1720I	GCTNAGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	73, 112, 168
BspTI	CTTAAG	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	67, 75, 141
BssT1I	CCWWGG	2 cut(s)	67, 75
Bst4CI	ACNGT	2 cut(s)	110, 142
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	22
BstBAI	YACGTR	2 cut(s)	329, 362
BstC8I	GCNNGC	2 cut(s)	45, 204
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 305
BstPAI	GACNNNNGTC	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	61
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	196, 218, 311
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	45, 204
Cfr13I	GGNCC	2 cut(s)	71, 166
Csp6I	GTAC	3 cut(s)	23, 106, 359
CviQI	GTAC	3 cut(s)	23, 106, 359
DdeI	CTNAG	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	67, 75
Eco47I	GGWCC	2 cut(s)	71, 166
Eco57I	CTGAAG	1 cut(s)	300
Eco72I	CACGTG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	67, 75
ErhI	CCWWGG	2 cut(s)	67, 75
FaiI	YATR	1 cut(s)	275
FaqI	GGGAC	2 cut(s)	57, 253
Fnu4HI	GCNGC	3 cut(s)	207, 210, 300
Fsp4HI	GCNGC	3 cut(s)	207, 210, 300
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	3 cut(s)	207, 210, 300
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	37, 127
HindII	GTYRAC	2 cut(s)	37, 127
HindIII	AAGCTT	1 cut(s)	41
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	37, 127
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	37, 127
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	110, 142
HpyCH4IV	ACGT	2 cut(s)	328, 361
HpyCH4V	TGCA	2 cut(s)	263, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 305
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	328, 361
KspAI	GTTAAC	1 cut(s)	127
LmnI	GCTCC	2 cut(s)	185, 305
LpnPI	CCDG	7 cut(s)	15, 179, 183, 188, 216, 288, 327
Lsp1109I	GCAGC	3 cut(s)	196, 218, 311
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	328, 361
MaeIII	GTNAC	3 cut(s)	61, 136, 233
MboII	GAAGA	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	75, 145, 157
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	8, 126, 369
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	209, 302
MspCI	CTTAAG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	199, 305
NlaIV	GGNNCC	3 cut(s)	73, 112, 168
NmuCI	GTSAC	2 cut(s)	136, 233
PkrI	GCNGC	3 cut(s)	208, 211, 301
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
Ppu21I	YACGTR	2 cut(s)	329, 362
PpuMI	RGGWCCY	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	73, 112, 168
PspPI	GGNCC	2 cut(s)	71, 166
PspPPI	RGGWCCY	1 cut(s)	166
PvuII	CAGCTG	2 cut(s)	209, 302
RsaI	GTAC	3 cut(s)	24, 107, 360
RsaNI	GTAC	3 cut(s)	23, 106, 359
SaqAI	TTAA	3 cut(s)	8, 126, 369
SatI	GCNGC	3 cut(s)	207, 210, 300
Sau96I	GGNCC	2 cut(s)	71, 166
SinI	GGWCC	2 cut(s)	71, 166
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	67, 75
TaaI	ACNGT	2 cut(s)	110, 142
TaiI	ACGT	2 cut(s)	331, 364
TasI	AATT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	8, 126, 369
Tru9I	TTAA	3 cut(s)	8, 126, 369
TseFI	GTSAC	2 cut(s)	136, 233
TseI	GCWGC	3 cut(s)	206, 209, 299
Tsp45I	GTSAC	2 cut(s)	136, 233
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	71, 166
XbaI	TCTAGA	1 cut(s)	94
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.