Rmu_co8143316.1_g000001

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8143316.1
N/A
Physical Location & Seq
Forward (+)
1 .. 643
643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8143316.1_g000001.1.cds

Sequence Viewer

Length: 331 bp
aagtacgagaagatgtagtagctgcatatagaaaggacatggagtggcagacaagtgagctgcttcttccatacaagaaaatgtgtactcttaagaaggtgcaagttgatgttgtagtcattgagtcagataatgtggcaaatgcaatagcagaggaggtttctaagtctgctataagcaatcttgtcataggtgccccatctcgtggcttgtttacaaggaaacaaaagggactgtccccaaaaatctcagcttgcacaccaggattttgtacagtctatgctgtttcaaaaggaaaattgtcatcactacgcccatctgattcccagtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

11.96

Weight (kDa)

9.25

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 205
AfaI GTAC 3 cut(s) 5, 87, 273
AfiI CCNNNNNNNGG 1 cut(s) 205
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 3 cut(s) 22, 60, 253
AluI AGCT 3 cut(s) 22, 60, 253
ApeKI GCWGC 2 cut(s) 22, 60
BaeGI GKGCMC 1 cut(s) 198
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 203
BbvI GCAGC 2 cut(s) 9, 47
BccI CCATC 2 cut(s) 207, 324
BciT130I CCWGG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 91
BisI GCNGC 2 cut(s) 23, 61
BlsI GCNGC 2 cut(s) 24, 62
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 2 cut(s) 9, 47
BshNI GGYRCC 1 cut(s) 193
BslFI GGGAC 2 cut(s) 222, 245
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 222, 245
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 327
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 236, 276
BstAFI CTTAAG 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 164, 249
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 9, 47
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 3 cut(s) 4, 86, 272
CviAII CATG 1 cut(s) 39
CviJI RGCY 4 cut(s) 22, 60, 209, 253
CviKI_1 RGCY 4 cut(s) 22, 60, 209, 253
CviQI GTAC 3 cut(s) 4, 86, 272
DdeI CTNAG 2 cut(s) 164, 249
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 42
FaiI YATR 7 cut(s) 27, 29, 40, 72, 175, 190, 281
FaqI GGGAC 2 cut(s) 222, 245
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 23, 61
Fsp4HI GCNGC 2 cut(s) 23, 61
GluI GCNGC 2 cut(s) 23, 61
Hin1II CATG 1 cut(s) 42
HinfI GANTC 2 cut(s) 124, 322
Hpy166II GTNNAC 2 cut(s) 86, 215
Hpy188I TCNGA 2 cut(s) 129, 321
Hpy8I GTNNAC 2 cut(s) 86, 215
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 2 cut(s) 236, 276
HpyCH4V TGCA 4 cut(s) 25, 102, 145, 257
HpyF3I CTNAG 2 cut(s) 164, 249
Hsp92II CATG 1 cut(s) 42
LpnPI CCDG 2 cut(s) 248, 275
Lsp1109I GCAGC 2 cut(s) 9, 47
MboII GAAGA 2 cut(s) 22, 58
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 147, 150
MseI TTAA 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 24, 62
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 195
RsaI GTAC 3 cut(s) 5, 87, 273
RsaNI GTAC 3 cut(s) 4, 86, 272
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 2 cut(s) 23, 61
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 24, 62, 101, 161, 195, 255
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 236, 276
TasI AATT 1 cut(s) 298
TatI WGTACW 2 cut(s) 85, 271
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 2 cut(s) 22, 60
Van91I CCANNNNNTGG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.