Rmu_co8158392.1_g000001

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8158392.1
N/A
Physical Location & Seq
Reverse (-)
106 .. 535
430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8158392.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atgaccagcaacggcgtcgtcatctttgcttcactgggagttacaggtgagttggttgaaggtagcggcggcggtgggttcgatctcaagagcggtgacctcgcgaattactggatcgaatttgacaggttttccgagtcgacccaaggaagcaccgaaatccacagcgttgagtggtggagcttcagctcgtatttcgattcaactcccttaatcgggtcagtagcacctcctcctcagaagactaatctgatgaacctaactgccaactcggtcaaatctccaccaccttctttggctctaactggttctgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.08

Weight (kDa)

4.29

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 140
AccII CGCG 1 cut(s) 104
AciI CCGC 4 cut(s) 66, 69, 72, 93
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 215, 216
AgsI TTSAA 2 cut(s) 59, 204
AluBI AGCT 2 cut(s) 183, 189
AluI AGCT 2 cut(s) 183, 189
AlwI GGATC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 59, 107
BbsI GAAGAC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 67, 70
BlsI GCNGC 2 cut(s) 68, 71
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 216
Bse1I ACTGG 3 cut(s) 39, 116, 310
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 215, 216
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 3 cut(s) 39, 116, 310
BseRI GAGGAG 2 cut(s) 222, 225
Bsh1236I CGCG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 215, 216
Bsp143I GATC 2 cut(s) 82, 114
Bsp68I TCGCGA 1 cut(s) 104
BspACI CCGC 4 cut(s) 66, 69, 72, 93
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 104
BspPI GGATC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 93
BsrI ACTGG 3 cut(s) 39, 116, 310
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 82, 114
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 95
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 85, 117
BstMBI GATC 2 cut(s) 82, 114
BstPI GGTNACC 1 cut(s) 95
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 32
BtuMI TCGCGA 1 cut(s) 104
CseI GACGC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviJI RGCY 3 cut(s) 183, 189, 299
CviKI_1 RGCY 3 cut(s) 183, 189, 299
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 84, 116
DpnII GATC 2 cut(s) 82, 114
Eco130I CCWWGG 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 67, 70
Fsp4HI GCNGC 2 cut(s) 67, 70
GluI GCNGC 2 cut(s) 67, 70
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 2 cut(s) 137, 200
HphI GGTGA 2 cut(s) 59, 107
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 4 cut(s) 136, 240, 252, 313
Hpy188III TCNNGA 2 cut(s) 88, 103
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 53, 300
HpyF3I CTNAG 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 82, 114
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 19, 20, 30, 97, 112, 291
MaeIII GTNAC 2 cut(s) 40, 95
MalI GATC 2 cut(s) 84, 116
MbiI CCGCTC 1 cut(s) 93
MboI GATC 2 cut(s) 82, 114
MboII GAAGA 1 cut(s) 253
MluCI AATT 2 cut(s) 106, 119
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 4 cut(s) 110, 240, 243, 246
MseI TTAA 2 cut(s) 212, 316
MvnI CGCG 1 cut(s) 104
NdeII GATC 2 cut(s) 82, 114
NmuCI GTSAC 1 cut(s) 95
NruI TCGCGA 1 cut(s) 104
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 68, 71
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 95
RruI TCGCGA 1 cut(s) 104
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 212, 316
SatI GCNGC 2 cut(s) 67, 70
Sau3AI GATC 2 cut(s) 82, 114
SchI GAGTC 1 cut(s) 146
SetI ASST 9 cut(s) 49, 64, 102, 131, 185, 191, 232, 261, 292
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 106, 119
SsiI CCGC 4 cut(s) 66, 69, 72, 93
StyI CCWWGG 1 cut(s) 145
TaqI TCGA 4 cut(s) 81, 117, 140, 198
TaqII GACCGA 1 cut(s) 262
TasI AATT 2 cut(s) 106, 119
TauI GCSGC 2 cut(s) 69, 72
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 212, 316
Tru9I TTAA 2 cut(s) 212, 316
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.