Rmu_co8173130.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8173130.1
N/A
Physical Location & Seq
Reverse (-)
184 .. 666
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8173130.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atgactacccaagcagatattccttcttcttctgctcctctccctccgatccctaaatacggtgtctttcttagttccagcggagaagacaccgatcaaaattttacagatcatctctgtactgctctgaaccaggaggggatattgacatttagagatggtgaagaactcgagaggggaaaagcaattgaagaatcaagatgtgtaattgtggttctttcaggaaactacaccaatccatggtgtttggatgcgattgcaaagatcgttgaatgcaaggatgtgatgatgaaactgggagtgttcccagtctttcttgatgtggatccatcttatgtacgaaaacaaacaggggatcatttcggggaagccttctcggagcatgaaaaggcctttaaacacgaaccggagaaggtgcgcaggtggagacgtgctcttacttcagtagccaatctctctggatggtttgtgcaaaatgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

160

Amino Acids

17.91

Weight (kDa)

5.21

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 411
Acc16I TGCGCA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 81
AclWI GGATC 4 cut(s) 43, 320, 333, 363
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 121, 339
AfiI CCNNNNNNNGG 2 cut(s) 59, 240
AgsI TTSAA 2 cut(s) 191, 272
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 4 cut(s) 43, 320, 333, 363
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 390
ApoI RAATTY 1 cut(s) 100
AspLEI GCGC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 170
BamHI GGATCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 3 cut(s) 152, 337, 456
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 421
BfuAI ACCTGC 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 2 cut(s) 302, 305
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 2 cut(s) 302, 305
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 240
Bse1I ACTGG 2 cut(s) 300, 308
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 256, 286, 467
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 59, 240
BseNI ACTGG 2 cut(s) 300, 308
BseRI GAGGAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 59, 240
BsmAI GTCTC 1 cut(s) 421
BsmBI CGTCTC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 6 cut(s) 48, 94, 109, 264, 325, 355
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 4 cut(s) 43, 320, 333, 363
BsrI ACTGG 2 cut(s) 300, 308
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 6 cut(s) 48, 94, 109, 264, 325, 355
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 256, 286, 467
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 6 cut(s) 51, 97, 112, 267, 328, 358
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 6 cut(s) 48, 94, 109, 264, 325, 355
BstNI CCWGG 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 392
BtgI CCRYGG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 3 cut(s) 256, 286, 467
BveI ACCTGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 120, 338
CviAII CATG 2 cut(s) 240, 383
CviJI RGCY 3 cut(s) 371, 392, 449
CviKI_1 RGCY 3 cut(s) 371, 392, 449
CviQI GTAC 2 cut(s) 120, 338
DdeI CTNAG 1 cut(s) 71
DpnI GATC 6 cut(s) 50, 96, 111, 266, 327, 357
DpnII GATC 6 cut(s) 48, 94, 109, 264, 325, 355
DraI TTTAAA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 421
FaeI CATG 2 cut(s) 243, 386
FaiI YATR 3 cut(s) 241, 336, 384
FatI CATG 2 cut(s) 239, 382
FokI GGATG 3 cut(s) 263, 293, 474
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 407
HhaI GCGC 1 cut(s) 420
Hin1II CATG 2 cut(s) 243, 386
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 48, 129, 379
Hpy188III TCNNGA 5 cut(s) 172, 198, 222, 317, 459
HpyAV CCTTC 3 cut(s) 33, 382, 406
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 260, 276, 472
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 2 cut(s) 243, 386
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 6 cut(s) 48, 94, 109, 264, 325, 355
LmnI GCTCC 2 cut(s) 40, 379
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 430
MalI GATC 6 cut(s) 50, 96, 111, 266, 327, 357
MboI GATC 6 cut(s) 48, 94, 109, 264, 325, 355
MboII GAAGA 5 cut(s) 18, 21, 98, 176, 203
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 100, 186, 207
MnlI CCTC 4 cut(s) 48, 54, 130, 168
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 239
NdeII GATC 6 cut(s) 48, 94, 109, 264, 325, 355
NlaIII CATG 2 cut(s) 243, 386
NlaIV GGNNCC 1 cut(s) 327
NsbI TGCGCA 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 411
PceI AGGCCT 1 cut(s) 392
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 327
PsrI GAACNNNNNNTAC 2 cut(s) 198, 230
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 121, 339
RsaNI GTAC 2 cut(s) 120, 338
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 6 cut(s) 48, 94, 109, 264, 325, 355
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 436
SetI ASST 3 cut(s) 417, 425, 433
SfaNI GCATC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 100, 186, 207
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 100, 186, 207
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 305, 399
Van91I CCANNNNNTGG 1 cut(s) 240
XapI RAATTY 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.