Rmu_co8179230.1_g000001

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8179230.1
N/A
Physical Location & Seq
Forward (+)
370 .. 683
314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8179230.1_g000001.1.cds

Sequence Viewer

Length: 314 bp
atgaagaagaaggcttatcctttcgccttagccttcctactcctactcacctctgctaaactctcactctcctcttcgccgccgaacgacacgtcagctctcaccgacttccgcctcaaaaccgacacccacggctacctccggtccaactggaccggacccgacccttgcgccgctgcatgggtcggagtccgatgctccaataacaacctccgagtcgtcggtctctcccttccttccctcaacctgcgcggcccgctcgactctctggctcagctggaccaacttcgccttcttgacctccacaacaaccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0042546 GO:0044085 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

9.69

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 259
AccII CGCG 1 cut(s) 252
AciI CCGC 5 cut(s) 80, 112, 174, 252, 257
AfiI CCNNNNNNNGG 1 cut(s) 180
AflIII ACRYGT 1 cut(s) 90
AjiI CACGTC 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 2 cut(s) 98, 277
AluI AGCT 2 cut(s) 98, 277
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 2 cut(s) 173, 252
AspS9I GGNCC 5 cut(s) 144, 153, 158, 254, 280
AsuHPI GGTGA 2 cut(s) 40, 94
AvaII GGWCC 4 cut(s) 144, 153, 158, 280
BbvI GCAGC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 4 cut(s) 80, 174, 177, 253
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 4 cut(s) 81, 175, 178, 254
Bme18I GGWCC 4 cut(s) 144, 153, 158, 280
BmgBI CACGTC 1 cut(s) 93
BmgT120I GGNCC 5 cut(s) 144, 153, 158, 254, 280
BmiI GGNNCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 28
Bpu1102I GCTNAGC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 130
BsaWI WCCGGW 2 cut(s) 141, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 142, 156
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 230
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 5 cut(s) 80, 112, 174, 252, 257
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 28, 273
BstDSI CCRYGG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 2 cut(s) 173, 252
BstMAI GTCTC 1 cut(s) 230
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 130
BtrI CACGTC 1 cut(s) 93
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 2 cut(s) 173, 252
Cfr13I GGNCC 5 cut(s) 144, 153, 158, 254, 280
CviAII CATG 1 cut(s) 180
CviJI RGCY 7 cut(s) 14, 32, 98, 135, 255, 272, 277
CviKI_1 RGCY 7 cut(s) 14, 32, 98, 135, 255, 272, 277
DdeI CTNAG 2 cut(s) 28, 273
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 4 cut(s) 144, 153, 158, 280
FaeI CATG 1 cut(s) 183
FaiI YATR 1 cut(s) 181
FatI CATG 1 cut(s) 179
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 80, 174, 177, 253
Fsp4HI GCNGC 4 cut(s) 80, 174, 177, 253
GlaI GCGC 2 cut(s) 172, 251
GluI GCNGC 4 cut(s) 80, 174, 177, 253
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 142, 156
HhaI GCGC 2 cut(s) 173, 252
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 2 cut(s) 171, 250
HinP1I GCGC 2 cut(s) 171, 250
HinfI GANTC 3 cut(s) 189, 216, 263
HpaII CCGG 2 cut(s) 142, 156
HphI GGTGA 2 cut(s) 40, 94
Hpy188I TCNGA 3 cut(s) 188, 194, 215
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 5 cut(s) 4, 43, 242, 246, 302
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 28, 273
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 2 cut(s) 171, 250
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 136, 155, 169, 254, 260, 263
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 185
MaeII ACGT 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 259
MboII GAAGA 3 cut(s) 16, 19, 66
MlyI GAGTC 3 cut(s) 198, 225, 257
MmeI TCCRAC 2 cut(s) 166, 171
MnlI CCTC 7 cut(s) 61, 82, 125, 149, 221, 251, 311
MspA1I CMGCKG 2 cut(s) 176, 277
MspI CCGG 2 cut(s) 142, 156
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 160
PkrI GCNGC 4 cut(s) 81, 175, 178, 254
PleI GAGTC 3 cut(s) 197, 224, 257
PpsI GAGTC 3 cut(s) 197, 224, 257
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 5 cut(s) 144, 153, 158, 254, 280
PvuII CAGCTG 1 cut(s) 277
SatI GCNGC 4 cut(s) 80, 174, 177, 253
Sau96I GGNCC 5 cut(s) 144, 153, 158, 254, 280
SchI GAGTC 3 cut(s) 198, 225, 257
SetI ASST 8 cut(s) 53, 95, 100, 141, 213, 249, 279, 303
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 4 cut(s) 144, 153, 158, 280
SsiI CCGC 5 cut(s) 80, 112, 174, 252, 257
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 261
TaqII GACCGA 1 cut(s) 212
TauI GCSGC 3 cut(s) 82, 176, 255
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 4 cut(s) 144, 153, 158, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.