Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192862.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 701

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192862.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

cacctggtcctcttcctcaaagcaagtcattcggaagcaatgtgccaagcccagcattacagccaaacgggtcggatttgcaccctgtgcctgcaacgccacctcttatgcctcccccagtgccccctaaaaccgaaggacaggtaccatccctttcaccaagtactccagcagtgctgccaccaaagaatacagctcctccaccattagatgtacaaactcatgcaccatctgtgctgccaactgttcccccaaaaaagacaccagttaataatggccctatctcaatgccagttgctccagttccaacacctccgaggaatgtgccaccaatttcaccagtccttaattcgagtacaccagaaacttcaccatcaagttctcatcaaggaaatgtgccagtaaataaggttcccataccagagccaaatgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

14.61

Weight (kDa)

9.35

Isoelectric Point (pI)

96.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	4 cut(s)	146, 165, 215, 357
AjnI	CCWGG	1 cut(s)	3
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	177, 237
Asp718I	GGTACC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	7, 277
AsuHPI	GGTGA	3 cut(s)	149, 329, 362
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbvI	GCAGC	2 cut(s)	164, 224
BccI	CCATC	3 cut(s)	156, 237, 381
BcgI	CGANNNNNNTGC	4 cut(s)	12, 46, 306, 340
BciT130I	CCWGG	1 cut(s)	5
BisI	GCNGC	2 cut(s)	178, 238
BlsI	GCNGC	2 cut(s)	179, 239
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	5
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 277
BmiI	GGNNCC	2 cut(s)	146, 413
BmrFI	CCNGG	1 cut(s)	5
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BpmI	CTGGAG	2 cut(s)	152, 284
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse1I	ACTGG	6 cut(s)	118, 265, 292, 301, 340, 400
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	6 cut(s)	118, 265, 292, 301, 340, 400
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	164, 224
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	213
BspANI	GGCC	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	146, 413
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	6 cut(s)	118, 265, 292, 301, 340, 400
BssECI	CCNNGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 96
BstNI	CCWGG	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	3
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	164, 224
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	125, 179
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	7, 277
CsiI	ACCWGGT	1 cut(s)	3
Csp6I	GTAC	4 cut(s)	145, 164, 214, 356
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	50, 63, 196, 278, 426
CviKI_1	RGCY	5 cut(s)	50, 63, 196, 278, 426
CviQI	GTAC	4 cut(s)	145, 164, 214, 356
DraIII	CACNNNGTG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	3
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	109, 224, 418
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	178, 238
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	178, 238
GluI	GCNGC	2 cut(s)	178, 238
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	152, 284
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	226
HphI	GGTGA	3 cut(s)	149, 329, 362
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	34, 75, 317
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	81, 94, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 96
Hsp92II	CATG	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	201, 303
Lsp1109I	GCAGC	2 cut(s)	164, 224
MabI	ACCWGGT	1 cut(s)	3
MboII	GAAGA	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	332, 348
MmeI	TCCRAC	2 cut(s)	53, 331
MnlI	CCTC	7 cut(s)	20, 26, 113, 122, 209, 311, 323
MseI	TTAA	2 cut(s)	269, 347
MspR9I	CCNGG	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	87, 96
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	146, 413
PkrI	GCNGC	2 cut(s)	179, 239
Psp6I	CCWGG	1 cut(s)	3
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	3
PspN4I	GGNNCC	2 cut(s)	146, 413
PspPI	GGNCC	2 cut(s)	7, 277
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
RsaI	GTAC	4 cut(s)	146, 165, 215, 357
RsaNI	GTAC	4 cut(s)	145, 164, 214, 356
SaqAI	TTAA	2 cut(s)	269, 347
SatI	GCNGC	2 cut(s)	178, 238
Sau96I	GGNCC	2 cut(s)	7, 277
ScaI	AGTACT	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	6, 105, 146, 198, 315, 413
SexAI	ACCWGGT	1 cut(s)	3
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	2 cut(s)	332, 348
StyD4I	CCNGG	1 cut(s)	3
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	352
TasI	AATT	2 cut(s)	332, 348
TatI	WGTACW	3 cut(s)	163, 213, 355
Tru1I	TTAA	2 cut(s)	269, 347
Tru9I	TTAA	2 cut(s)	269, 347
TscAI	CASTG	2 cut(s)	125, 179
TseI	GCWGC	2 cut(s)	177, 237
TspRI	CASTG	2 cut(s)	125, 179
VpaK11BI	GGWCC	1 cut(s)	7
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.