Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8194228.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 534

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8194228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggcagtcaaggatcctaatacttttgatccagattccgaaccatttgtggaggttgatccaacgggacgttttggcaggtatgatgttctccttggtcagggtgctgtcaagaaggtctatagggcatttgatcagcagcaaggtaacgaggtggcatggaataaggtgcggttgaagaactttaccgacgatccaatgctgttgaatcacctttacgcggaggttaagctattgagagagttggagaacaagtatattatcgagtgttacagtgtgtggaaggatgttgagcggaatgctttgaattttgtgacggaggtgtgcaattctgggaacctgagggattataggaagaagcatcgccgtgtgaatatcaaggctttgaagaagtggtcaaagcaggtgcttgagggattgcagtacctccatacacatgagccatgcatcattcatagagatctcaattgcagcaacatctttgtcaatgggaataatggccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

168

Amino Acids

19.64

Weight (kDa)

8.62

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	2 cut(s)	69, 394
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	172, 221, 295
AclWI	GGATC	5 cut(s)	8, 21, 23, 53, 188
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	100, 220
AgsI	TTSAA	4 cut(s)	178, 208, 307, 388
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
AlwI	GGATC	5 cut(s)	8, 21, 23, 53, 188
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	139, 471
ApoI	RAATTY	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	151, 483
BceAI	ACGGC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	121
BfuAI	ACCTGC	2 cut(s)	69, 394
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	140, 472
BlsI	GCNGC	2 cut(s)	141, 473
BmiI	GGNNCC	2 cut(s)	15, 338
BmsI	GCATC	2 cut(s)	370, 456
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 220
Bse21I	CCTNAGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	100, 220
BseMII	CTCAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	151, 483
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	100, 220
BsmFI	GGGAC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	501
Bsp143I	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
BspACI	CCGC	3 cut(s)	172, 221, 295
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	15, 338
BspMI	ACCTGC	2 cut(s)	69, 394
BspPI	GGATC	5 cut(s)	8, 21, 23, 53, 188
BsrBI	CCGCTC	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	6 cut(s)	16, 31, 61, 136, 196, 463
BstMBI	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	151, 483
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	2 cut(s)	69, 394
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	159, 437, 444
CviJI	RGCY	4 cut(s)	232, 383, 442, 501
CviKI_1	RGCY	4 cut(s)	232, 383, 442, 501
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	6 cut(s)	15, 30, 60, 135, 195, 462
DpnII	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	162, 440, 447
FaiI	YATR	9 cut(s)	84, 123, 160, 258, 351, 432, 438, 445, 456
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	158, 436, 443
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	140, 472
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	140, 472
GluI	GCNGC	2 cut(s)	140, 472
HaeIII	GGCC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	162, 440, 447
HinfI	GANTC	2 cut(s)	35, 208
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	32, 112
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	109, 277
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	327, 421, 447, 471
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	162, 440, 447
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
LpnPI	CCDG	6 cut(s)	45, 64, 86, 318, 353, 389
Lsp1109I	GCAGC	2 cut(s)	151, 483
LweI	GCATC	2 cut(s)	370, 456
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	146, 269, 313
MalI	GATC	6 cut(s)	15, 30, 60, 135, 195, 462
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
MboII	GAAGA	3 cut(s)	190, 367, 400
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	307, 328, 466
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	86, 225
MnlI	CCTC	7 cut(s)	46, 145, 217, 313, 336, 406, 437
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	366, 435
Msp20I	TGGCCA	1 cut(s)	501
MunI	CAATTG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	304
MvnI	CGCG	1 cut(s)	221
NdeII	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
NlaIII	CATG	3 cut(s)	162, 440, 447
NlaIV	GGNNCC	2 cut(s)	15, 338
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	394
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	35, 208
PkrI	GCNGC	2 cut(s)	141, 473
PspN4I	GGNNCC	2 cut(s)	15, 338
PsuI	RGATCY	2 cut(s)	13, 460
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	366, 435
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	140, 472
Sau3AI	GATC	6 cut(s)	13, 28, 58, 133, 193, 460
SfaNI	GCATC	2 cut(s)	370, 456
SfcI	CTRYAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	366, 435
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	307, 328, 466
SsiI	CCGC	3 cut(s)	172, 221, 295
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	307, 328, 466
TfiI	GAWTC	2 cut(s)	35, 208
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	139, 471
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.