Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8194458.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 686

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8194458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 685 bp

atgaggcggcagaggagtgggccttcgtcgaagcacccagatagggctgaggagttctcactggctgagcttgcagcagctacaaatggttttgcattggagaacaagattggtgcagggagctttggggtggtgtacagagggaaattggatgacgggcgcgaagttgctatcaagagaggagaaacagcaaccaaggtgaagaagtaccaagagaaggatactgctttcgattccgagttgtcattcttgtcgaggcttcatcacaagcatttggttaggcttgttgggtattgtgaggagaaggaggagaggctgttggtttatgagtacatgaagaatggtgcgctccatgatcatttacatgacaagaacaatgtcgagaagagtagtagtttgattaattcttggaaaatgaggatcaaggtggctttagatgctgccagaggcattgagtatctacacaactatgcagtccctcctataattcacagagatataaaatcctcgaacattctgatagacggaaattggactggaagagtatctgattttggattatcactattgggtccggaaaatgacagcgactataggccaatgaaggcagctggaaccgttggctatattgatccagagtactatggtttaaacttattaacagcaaagagtgatgtgtatgggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

7.83

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	2 cut(s)	428, 626
AfaI	GTAC	4 cut(s)	137, 209, 332, 641
AfiI	CCNNNNNNNGG	2 cut(s)	43, 217
AluBI	AGCT	4 cut(s)	70, 80, 123, 611
AluI	AGCT	4 cut(s)	70, 80, 123, 611
AlwI	GGATC	2 cut(s)	428, 626
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	2 cut(s)	20, 596
ApeKI	GCWGC	4 cut(s)	74, 77, 440, 608
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	162, 349
AspS9I	GGNCC	2 cut(s)	20, 572
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	572
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	86, 89, 427, 620
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	355
BfmI	CTRYAG	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	5 cut(s)	8, 75, 78, 441, 609
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	5 cut(s)	9, 76, 79, 442, 610
BmcAI	AGTACT	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	20, 572
BmiI	GGNNCC	2 cut(s)	573, 616
BmsI	GCATC	1 cut(s)	427
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 217
Bse1I	ACTGG	2 cut(s)	66, 541
BseAI	TCCGGA	1 cut(s)	574
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	43, 217
BseMII	CTCAG	2 cut(s)	39, 57
BseNI	ACTGG	2 cut(s)	66, 541
BseRI	GAGGAG	5 cut(s)	28, 65, 195, 314, 323
BseXI	GCAGC	4 cut(s)	86, 89, 427, 620
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	22, 598
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	43, 217
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	22, 598
Bsp13I	TCCGGA	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	355, 420, 631
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	22, 598
BspCNI	CTCAG	2 cut(s)	40, 58
BspEI	TCCGGA	1 cut(s)	574
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	573, 616
BspPI	GGATC	2 cut(s)	428, 626
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	66, 541
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	355, 420, 631
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	2 cut(s)	380, 535
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	48, 66
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	162, 349
BstKTI	GATC	3 cut(s)	358, 423, 634
BstMBI	GATC	3 cut(s)	355, 420, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 437
BstSFI	CTRYAG	1 cut(s)	592
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	86, 89, 427, 620
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	22, 598
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	2 cut(s)	162, 349
Cfr13I	GGNCC	2 cut(s)	20, 572
Csp6I	GTAC	4 cut(s)	136, 208, 331, 640
CviAII	CATG	3 cut(s)	334, 353, 365
CviQI	GTAC	4 cut(s)	136, 208, 331, 640
DdeI	CTNAG	2 cut(s)	48, 66
DpnI	GATC	3 cut(s)	357, 422, 633
DpnII	GATC	3 cut(s)	355, 420, 631
DraI	TTTAAA	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	380, 535
EarI	CTCTTC	2 cut(s)	380, 535
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	337, 356, 368
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	3 cut(s)	333, 352, 364
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	8, 75, 78, 441, 609
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	8, 75, 78, 441, 609
GlaI	GCGC	2 cut(s)	161, 348
GluI	GCNGC	5 cut(s)	8, 75, 78, 441, 609
HaeIII	GGCC	2 cut(s)	22, 598
HapII	CCGG	1 cut(s)	575
HhaI	GCGC	2 cut(s)	162, 349
Hin1II	CATG	3 cut(s)	337, 356, 368
Hin6I	GCGC	2 cut(s)	160, 347
HinP1I	GCGC	2 cut(s)	160, 347
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	238, 519, 550
Hpy188III	TCNNGA	4 cut(s)	175, 382, 575, 635
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	4 cut(s)	33, 211, 298, 598
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4V	TGCA	4 cut(s)	74, 95, 116, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 437
HpyF3I	CTNAG	2 cut(s)	48, 66
Hsp92II	CATG	3 cut(s)	337, 356, 368
HspAI	GCGC	2 cut(s)	160, 347
Kpn2I	TCCGGA	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	355, 420, 631
LmnI	GCTCC	2 cut(s)	120, 354
LpnPI	CCDG	8 cut(s)	47, 51, 102, 457, 522, 588, 597, 648
Lsp1109I	GCAGC	4 cut(s)	86, 89, 427, 620
LweI	GCATC	1 cut(s)	427
MalI	GATC	3 cut(s)	357, 422, 633
MboI	GATC	3 cut(s)	355, 420, 631
MboII	GAAGA	4 cut(s)	214, 349, 397, 552
MluCI	AATT	4 cut(s)	146, 403, 486, 529
MroI	TCCGGA	1 cut(s)	574
MseI	TTAA	3 cut(s)	402, 650, 659
MslI	CAYNNNNRTG	2 cut(s)	363, 468
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	575
MssI	GTTTAAAC	1 cut(s)	651
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	71, 437
NdeII	GATC	3 cut(s)	355, 420, 631
NlaIII	CATG	3 cut(s)	337, 356, 368
NlaIV	GGNNCC	2 cut(s)	573, 616
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	9, 76, 79, 442, 610
PmeI	GTTTAAAC	1 cut(s)	651
PshBI	ATTAAT	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	573, 616
PspPI	GGNCC	2 cut(s)	20, 572
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	137, 209, 332, 641
RsaNI	GTAC	4 cut(s)	136, 208, 331, 640
RseI	CAYNNNNRTG	2 cut(s)	363, 468
SaqAI	TTAA	3 cut(s)	402, 650, 659
SatI	GCNGC	5 cut(s)	8, 75, 78, 441, 609
Sau3AI	GATC	3 cut(s)	355, 420, 631
Sau96I	GGNCC	2 cut(s)	20, 572
ScaI	AGTACT	1 cut(s)	641
SetI	ASST	6 cut(s)	72, 82, 125, 201, 429, 613
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	363, 468
Sse9I	AATT	4 cut(s)	146, 403, 486, 529
SsiI	CCGC	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	619
TaqI	TCGA	5 cut(s)	29, 231, 254, 381, 509
TasI	AATT	4 cut(s)	146, 403, 486, 529
TatI	WGTACW	3 cut(s)	135, 330, 639
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	402, 650, 659
Tru9I	TTAA	3 cut(s)	402, 650, 659
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	4 cut(s)	74, 77, 440, 608
TspDTI	ATGAA	3 cut(s)	251, 350, 617
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.