Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201422.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 694

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201422.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

gctaagcttcaggaatttcttggaaggaaagagttggacagacatctggatgctgatgaagctatagttcttggtgccgctttgcatgctgctaatttaagcgatggaatcaaactgaatcgtaagttaggaatggttgatggttcatcctatgggtttgtgcttgagttagatggccctgatcttctgaaagatgacagcactagacagttactcgtaccgcgaatgaagaaactccctagcaagatgttcagatcctttacccatagcaaagactttgaggtttcactagcatatgagagtgaagctcttttaccccctggtgccacctctcctctatttgccaagtatgctgtgtcgggattgacagatgcaagtgagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0009507 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP70

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

5.92

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 323
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	78, 221
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	7, 62, 308
AluI	AGCT	3 cut(s)	7, 62, 308
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	74, 323
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	3 cut(s)	98, 134, 167
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	3 cut(s)	204, 240, 290
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	78, 90
BlpI	GCTNAGC	1 cut(s)	3
BlsI	GCNGC	2 cut(s)	79, 91
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	76, 325
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	40, 361
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
Bpu1102I	GCTNAGC	1 cut(s)	3
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	55, 146
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	2 cut(s)	74, 323
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	181, 254
Bsp1720I	GCTNAGC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	78, 221
BspANI	GGCC	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	76, 325
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	2 cut(s)	74, 323
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	181, 254
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	3
BstF5I	GGATG	2 cut(s)	55, 146
BstFNI	CGCG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	184, 257
BstMBI	GATC	2 cut(s)	181, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 86, 350
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	55, 146
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	7, 62, 177, 308
CviKI_1	RGCY	4 cut(s)	7, 62, 177, 308
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	3
DpnI	GATC	2 cut(s)	183, 256
DpnII	GATC	2 cut(s)	181, 254
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	89
FaiI	YATR	7 cut(s)	65, 87, 153, 267, 295, 297, 351
FatI	CATG	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	78, 90
FokI	GGATG	2 cut(s)	62, 133
Fsp4HI	GCNGC	2 cut(s)	78, 90
FspBI	CTAG	3 cut(s)	204, 240, 290
GluI	GCNGC	2 cut(s)	78, 90
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	108, 118
Hpy188I	TCNGA	2 cut(s)	189, 254
Hpy188III	TCNNGA	3 cut(s)	11, 47, 360
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	85, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 86, 350
HpyF3I	CTNAG	1 cut(s)	3
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	181, 254
LpnPI	CCDG	4 cut(s)	32, 192, 306, 333
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	40, 361
MaeI	CTAG	3 cut(s)	204, 240, 290
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	2 cut(s)	183, 256
MboI	GATC	2 cut(s)	181, 254
MboII	GAAGA	2 cut(s)	176, 241
MflI	RGATCY	1 cut(s)	254
MluCI	AATT	2 cut(s)	14, 94
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	3 cut(s)	274, 340, 345
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	59, 86, 350
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	181, 254
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	76, 325
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	108, 118
PkrI	GCNGC	2 cut(s)	79, 91
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	76, 325
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	254
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	78, 90
Sau3AI	GATC	2 cut(s)	181, 254
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	9, 64, 285, 310, 332
SfaNI	GCATC	2 cut(s)	40, 361
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	14, 94
SsiI	CCGC	2 cut(s)	78, 221
SspMI	CTAG	3 cut(s)	204, 240, 290
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	210
TasI	AATT	2 cut(s)	14, 94
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	108, 118
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	72, 135, 242
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	3 cut(s)	204, 240, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.