Rmu_co8202564.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8202564.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 434
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8202564.1_g000001.1.cds

Sequence Viewer

Length: 343 bp
atgacctttaaagatgctttcaccaagcatgaaatctctgcgagatacgaatcaaacaagttgcagcaatggagagatgctttaaacaaggtcgccactttttctgggtggcatacagacaagtttaggactgacagagaacttgttgatgccattgtggactttgtctgcactaaagtagtacctactgcaattgagtccaccggggatttcacaatatttgaagcaacaagacaagccatggatcagcttatgagggcattaaaagataacaacgtcactgccgctggggtgtacggcatggggggcgttggaaagacaacccttgtggaacatgtcggtc

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

6.27

Isoelectric Point (pI)

21.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 252
AfaI GTAC 2 cut(s) 183, 296
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AlwI GGATC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 13
BbvI GCAGC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 313
BcnI CCSGG 1 cut(s) 205
BisI GCNGC 2 cut(s) 65, 285
BlsI GCNGC 2 cut(s) 66, 286
Bme1390I CCNGG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 4, 67, 139
BpuMI CCSGG 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 204, 240
Bse3DI GCAATG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 204, 240
BseJI GATNNNNATC 1 cut(s) 49
BseMI GCAATG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 204
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 204, 240
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 240
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Csp6I GTAC 2 cut(s) 182, 295
CspCI CAANNNNNGTGG 1 cut(s) 309
CviAII CATG 4 cut(s) 29, 241, 301, 335
CviJI RGCY 2 cut(s) 239, 250
CviKI_1 RGCY 2 cut(s) 239, 250
CviQI GTAC 2 cut(s) 182, 295
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraI TTTAAA 2 cut(s) 10, 84
Eco130I CCWWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 32, 244, 304, 338
FaiI YATR 6 cut(s) 30, 114, 242, 254, 302, 336
FatI CATG 4 cut(s) 28, 240, 300, 334
Fnu4HI GCNGC 2 cut(s) 65, 285
Fsp4HI GCNGC 2 cut(s) 65, 285
GluI GCNGC 2 cut(s) 65, 285
GsaI CCCAGC 1 cut(s) 291
HapII CCGG 1 cut(s) 204
Hin1II CATG 4 cut(s) 32, 244, 304, 338
HinfI GANTC 2 cut(s) 50, 197
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 3 cut(s) 160, 201, 295
Hpy8I GTNNAC 3 cut(s) 160, 201, 295
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 64, 171, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 32, 244, 304, 338
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 3 cut(s) 90, 217, 273
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 3 cut(s) 4, 67, 139
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 192
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 1 cut(s) 249
MseI TTAA 3 cut(s) 9, 83, 263
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 205
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 205
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 244
NlaIII CATG 4 cut(s) 32, 244, 304, 338
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 66, 286
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PscI ACATGT 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 287
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 2 cut(s) 183, 296
RsaNI GTAC 2 cut(s) 182, 295
SaqAI TTAA 3 cut(s) 9, 83, 263
SatI GCNGC 2 cut(s) 65, 285
Sau3AI GATC 1 cut(s) 244
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 205
SetI ASST 5 cut(s) 8, 93, 187, 252, 279
SfaNI GCATC 3 cut(s) 4, 67, 139
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 279
TaqII GACCGA 1 cut(s) 329
TasI AATT 1 cut(s) 192
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 3 cut(s) 9, 83, 263
Tru9I TTAA 3 cut(s) 9, 83, 263
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 164
XceI RCATGY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.