Rmu_co8207302.1_g000001
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8207302.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 720
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8207302.1_g000001.1.cds

Sequence Viewer

Length: 353 bp
tgcaggctgcagagcaggagtatgaaaaggaaaaacttagtgaaaggattgcaaaactatctggtggtgttgccgtgatacaggtcggagcacaaactgagacagagctgaaagaaaagaaacttagagttgaagatgctctcaatgcaacaaaggcagctgttgaggagggtattgttgttggaggaggatgcacccttctgaggttggctgcaaaggttgatgcaattaagaatgctcttgataatgacgaagaaaaggttggagcagatattgttaaaagagctcttatttaccctctgaaattgatagccaagaatgctggtgtgaatggaagtgtggtcagcgagaag

Protein Analysis

117

Amino Acids

12.4

Weight (kDa)

5.63

Isoelectric Point (pI)

22.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 3 cut(s) 108, 160, 286
AluI AGCT 3 cut(s) 108, 160, 286
Alw21I GWGCWC 2 cut(s) 93, 288
Alw26I GTCTC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 7, 157, 211
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 93, 288
BbvI GCAGC 2 cut(s) 169, 198
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 3 cut(s) 8, 158, 212
BlsI GCNGC 3 cut(s) 9, 159, 213
BmsI GCATC 3 cut(s) 126, 181, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 89, 193
BseRI GAGGAG 2 cut(s) 181, 200
BseXI GCAGC 2 cut(s) 169, 198
BsiHKAI GWGCWC 2 cut(s) 93, 288
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 94
BsmI GAATGC 2 cut(s) 240, 324
Bsp1286I GDGCHC 2 cut(s) 93, 288
BspCNI CTCAG 2 cut(s) 90, 194
BspMAI CTGCAG 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 5
BstDEI CTNAG 4 cut(s) 37, 98, 124, 202
BstF5I GGATG 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 145, 154, 319
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 169, 198
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 5
CviJI RGCY 6 cut(s) 7, 108, 160, 211, 286, 313
CviKI_1 RGCY 6 cut(s) 7, 108, 160, 211, 286, 313
DdeI CTNAG 4 cut(s) 37, 98, 124, 202
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 288
FaiI YATR 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 8, 158, 212
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 8, 158, 212
GluI GCNGC 3 cut(s) 8, 158, 212
Hpy188I TCNGA 3 cut(s) 88, 203, 302
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 7 cut(s) 3, 10, 52, 148, 194, 214, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 154, 319
HpyF3I CTNAG 4 cut(s) 37, 98, 124, 202
LmnI GCTCC 2 cut(s) 88, 265
LpnPI CCDG 3 cut(s) 47, 67, 308
Lsp1109I GCAGC 2 cut(s) 169, 198
LweI GCATC 3 cut(s) 126, 181, 213
MboII GAAGA 2 cut(s) 145, 265
MhlI GDGCHC 2 cut(s) 93, 288
MluCI AATT 2 cut(s) 227, 304
MmeI TCCRAC 3 cut(s) 66, 162, 243
MnlI CCTC 6 cut(s) 159, 162, 178, 181, 197, 308
MseI TTAA 2 cut(s) 230, 278
MspA1I CMGCKG 1 cut(s) 160
Mva1269I GAATGC 2 cut(s) 240, 324
MwoI GCNNNNNNNGC 3 cut(s) 145, 154, 319
PctI GAATGC 2 cut(s) 240, 324
PkrI GCNGC 3 cut(s) 9, 159, 213
Psp124BI GAGCTC 1 cut(s) 288
PstI CTGCAG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 230, 278
SatI GCNGC 3 cut(s) 8, 158, 212
SduI GDGCHC 2 cut(s) 93, 288
SetI ASST 7 cut(s) 86, 110, 162, 208, 221, 263, 288
SfaNI GCATC 3 cut(s) 126, 181, 213
SfcI CTRYAG 1 cut(s) 8
SgeI CNNG 8 cut(s) 16, 28, 74, 87, 94, 253, 327, 335
Sse9I AATT 2 cut(s) 227, 304
SstI GAGCTC 1 cut(s) 288
TasI AATT 2 cut(s) 227, 304
Tru1I TTAA 2 cut(s) 230, 278
Tru9I TTAA 2 cut(s) 230, 278
TseI GCWGC 3 cut(s) 7, 157, 211
TspDTI ATGAA 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.