Rmu_co8208314.1_g000001

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8208314.1
N/A
Physical Location & Seq
Forward (+)
20 .. 722
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8208314.1_g000001.1.cds

Sequence Viewer

Length: 520 bp
atggttaatagaggtgatctggttatcattggcatctctgctggtgtagcccttggaattttgatagctgcactcatatttttcggaataaggtggtaccaaaagcatgccaatcttcgacgatgtgctaatgagcgtagtttaacaactcttcctatacgcacaaatggcttaggcacaagcatcgaccttagtgtatctctttcaactaacatacctattcaaggatccgagaaggttaaaaaaagttctccactctcctggtggaataatcacaacaaagaacgatttccttctgcatcaggcgtacttagatactcttacaaggatgtgcagaaagctacacagaatttcacaacaattttaggacaaggggcttttggtccagtatataaagcaacaatgcgtgctggagaggtagtagctgtgaaggtgcttgcttcagattccaagcagggagagaaagagttccaaacagaggtaaagactatatcagctacatttcatataggtcctgtca

Protein Analysis

173

Amino Acids

18.86

Weight (kDa)

10.0

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 96
AclWI GGATC 2 cut(s) 222, 235
AcsI RAATTY 2 cut(s) 57, 349
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 98, 309
AfiI CCNNNNNNNGG 2 cut(s) 224, 478
AgsI TTSAA 2 cut(s) 207, 224
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 4 cut(s) 68, 341, 425, 497
AluI AGCT 4 cut(s) 68, 341, 425, 497
AlwI GGATC 2 cut(s) 222, 235
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 57, 349
Asp700I GAANNNNTTC 2 cut(s) 288, 467
Asp718I GGTACC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 383, 512
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 2 cut(s) 383, 512
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 262
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 2 cut(s) 383, 512
BmgT120I GGNCC 2 cut(s) 383, 512
BmiI GGNNCC 2 cut(s) 98, 229
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 3 cut(s) 42, 192, 308
BpmI CTGGAG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 478
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 224, 478
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 55
BsgI GTGCAG 2 cut(s) 54, 353
BshNI GGYRCC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 224, 478
Bsp143I GATC 2 cut(s) 16, 227
BspLI GGNNCC 2 cut(s) 98, 229
BspPI GGATC 2 cut(s) 222, 235
BspT107I GGYRCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 16, 227
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 108, 408, 438
BstDEI CTNAG 3 cut(s) 172, 191, 311
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 19, 230
BstMBI GATC 2 cut(s) 16, 227
BstMWI GCNNNNNNNGC 2 cut(s) 47, 168
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 227
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 108, 408, 438
Cfr13I GGNCC 2 cut(s) 383, 512
Csp6I GTAC 2 cut(s) 97, 308
CviAII CATG 1 cut(s) 107
CviJI RGCY 7 cut(s) 50, 68, 171, 341, 377, 425, 497
CviKI_1 RGCY 7 cut(s) 50, 68, 171, 341, 377, 425, 497
CviQI GTAC 2 cut(s) 97, 308
DdeI CTNAG 3 cut(s) 172, 191, 311
DpnI GATC 2 cut(s) 18, 229
DpnII GATC 2 cut(s) 16, 227
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 383, 512
Eco57I CTGAAG 1 cut(s) 426
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 110
FaiI YATR 9 cut(s) 77, 108, 158, 215, 391, 393, 491, 507, 509
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 432
Hin1II CATG 1 cut(s) 110
HinfI GANTC 1 cut(s) 446
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 86, 232, 445
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 3 cut(s) 229, 303, 424
HpyCH4V TGCA 3 cut(s) 71, 299, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 168
HpyF3I CTNAG 3 cut(s) 172, 191, 311
Hsp92II CATG 1 cut(s) 110
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 16, 227
LpnPI CCDG 8 cut(s) 5, 27, 247, 274, 288, 396, 399, 440
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 3 cut(s) 42, 192, 308
MalI GATC 2 cut(s) 18, 229
MboI GATC 2 cut(s) 16, 227
MboII GAAGA 2 cut(s) 107, 143
MflI RGATCY 1 cut(s) 227
MluCI AATT 3 cut(s) 57, 349, 360
MnlI CCTC 3 cut(s) 5, 409, 472
MroXI GAANNNNTTC 2 cut(s) 288, 467
MseI TTAA 3 cut(s) 6, 143, 240
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 47, 168
NdeII GATC 2 cut(s) 16, 227
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 98, 229
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PdmI GAANNNNTTC 2 cut(s) 288, 467
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 98, 229
PspPI GGNCC 2 cut(s) 383, 512
PspPPI RGGWCCY 1 cut(s) 512
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 2 cut(s) 98, 309
RsaNI GTAC 2 cut(s) 97, 308
SaqAI TTAA 3 cut(s) 6, 143, 240
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 16, 227
Sau96I GGNCC 2 cut(s) 383, 512
ScrFI CCNGG 1 cut(s) 262
SfaNI GCATC 3 cut(s) 42, 192, 308
SinI GGWCC 2 cut(s) 383, 512
SphI GCATGC 1 cut(s) 110
Sse9I AATT 3 cut(s) 57, 349, 360
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 2 cut(s) 118, 186
TasI AATT 3 cut(s) 57, 349, 360
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 3 cut(s) 6, 143, 240
Tru9I TTAA 3 cut(s) 6, 143, 240
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 383, 512
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 57, 349
XceI RCATGY 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 288, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.