Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213646.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 687

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 317 bp

ctggaccaagacctcaatgctaagatctcggactttggtctggccaagcttgatgaagaggagaaaactcatattagcaccaaggttgctggaactatctctgctcagggcacgacagagcggcggggcatgcaggacgaaagcgaggggtcggacgaaccggtcttcaattgggtggagtcgccggcgatgaggttgcagtgctgcatgtccggttgcagttgcaggtcaggtcgctgcccagaaacctgcaaccccgacctcctccggcaaactccgcaccgccgtcgctgcctgaaacagcctactgcgtcgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

11.74

Weight (kDa)

5.67

Isoelectric Point (pI)

80.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc36I	ACCTGC	2 cut(s)	216, 257
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	4 cut(s)	121, 124, 278, 283
AcoI	YGGCCR	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	3 cut(s)	204, 237, 291
AsiGI	ACCGGT	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	191, 224, 278
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	4 cut(s)	178, 212, 269, 303
BfuAI	ACCTGC	2 cut(s)	216, 257
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	4 cut(s)	122, 205, 238, 292
BlsI	GCNGC	4 cut(s)	123, 206, 239, 293
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BoxI	GACNNNNGTC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	160, 212
Bse118I	RCCGGY	2 cut(s)	160, 184
BseDI	CCNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	74, 254
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	191, 224, 278
BshFI	GGCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	160
BsiSI	CCGG	4 cut(s)	161, 185, 213, 268
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	121, 124, 278, 283
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	118
BspMI	ACCTGC	2 cut(s)	216, 257
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	2 cut(s)	160, 184
BssAI	RCCGGY	2 cut(s)	160, 184
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	131, 186
BstDEI	CTNAG	2 cut(s)	21, 105
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 277, 291
BstNSI	RCATGY	2 cut(s)	133, 211
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	191, 224, 278
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
BveI	ACCTGC	2 cut(s)	216, 257
Cac8I	GCNNGC	2 cut(s)	131, 186
Cfr10I	RCCGGY	2 cut(s)	160, 184
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	300
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	2 cut(s)	130, 208
CviJI	RGCY	3 cut(s)	44, 49, 304
CviKI_1	RGCY	3 cut(s)	44, 49, 304
DdeI	CTNAG	2 cut(s)	21, 105
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	133, 211
FaiI	YATR	3 cut(s)	72, 131, 209
FatI	CATG	2 cut(s)	129, 207
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	122, 205, 238, 292
Fsp4HI	GCNGC	4 cut(s)	122, 205, 238, 292
GluI	GCNGC	4 cut(s)	122, 205, 238, 292
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	4 cut(s)	161, 185, 213, 268
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	133, 211
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	4 cut(s)	161, 185, 213, 268
Hpy188I	TCNGA	2 cut(s)	31, 154
Hpy99I	CGWCG	2 cut(s)	291, 316
HpyCH4V	TGCA	6 cut(s)	133, 199, 207, 219, 225, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 277, 291
HpyF3I	CTNAG	2 cut(s)	21, 105
Hsp92II	CATG	2 cut(s)	133, 211
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	191, 224, 278
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	68, 157
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	23, 52, 139, 186, 272, 275
Mox20I	TGGCCA	1 cut(s)	44
MreI	CGCCGGCG	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	4 cut(s)	161, 185, 213, 268
MunI	CAATTG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	130, 277, 291
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	24
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	133, 211
NspI	RCATGY	2 cut(s)	133, 211
PaeI	GCATGC	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	123, 206, 239, 293
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PshAI	GACNNNNGTC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	24
SatI	GCNGC	4 cut(s)	122, 205, 238, 292
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	8 cut(s)	15, 51, 87, 197, 230, 235, 251, 264
SgrAI	CRCCGGYG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	4 cut(s)	121, 124, 278, 283
StyI	CCWWGG	1 cut(s)	81
TasI	AATT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	3 cut(s)	204, 237, 291
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	2 cut(s)	133, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.