Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216658.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 695

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgatctgtcgtatatgtgaggttgaaataccaactgtccacgtagaggagcactctcgaatatgtacaattgctgacagatgtgacttgaagggcttaactgtgaatgaaagacttgaaagagttgctgaagctcttgaaaggataatggaatctcggacaacaaaaaatgttgatacacaagagacaagttttgatgctgcaaaagtgtatccatcaagtatccatgaagattttattgccaaaagaaaaaaaagtatccatgaagatttagatgacttatcacctaaacgaaatgacttgcctcaagacatgcttgattgtgttcctgatgctgacaattcttttgtcatggaagatcttaatattatgcctgacatgtcatgtgacgcacgttctgctttgacacctgaacaagggaccagaacctcatcagcaggtagctccactccaagatcgccacttttaacccctagaaccactcatattgaaatgctgttgagtggaaggggaacaataccagaacttgagaattgtcagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032502 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

181

Amino Acids

20.32

Weight (kDa)

4.83

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	46, 416
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	5 cut(s)	26, 91, 119, 140, 491
AluBI	AGCT	2 cut(s)	134, 444
AluI	AGCT	2 cut(s)	134, 444
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	223
BciVI	GTATCC	3 cut(s)	222, 233, 269
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	428
BfuI	GTATCC	3 cut(s)	222, 233, 269
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	2 cut(s)	187, 322
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuEI	CTTGAG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 416
BseLI	CCNNNNNNNGG	2 cut(s)	46, 416
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	46, 416
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	3, 358, 455
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	65
BssMI	GATC	3 cut(s)	3, 358, 455
Bst4CI	ACNGT	2 cut(s)	37, 103
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstKTI	GATC	3 cut(s)	6, 361, 458
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	3, 358, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNSI	RCATGY	2 cut(s)	316, 382
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	3 cut(s)	222, 233, 269
BveI	ACCTGC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	420
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	66
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	6 cut(s)	227, 263, 313, 352, 379, 384
CviJI	RGCY	3 cut(s)	96, 134, 444
CviKI_1	RGCY	3 cut(s)	96, 134, 444
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	3 cut(s)	5, 360, 457
DpnII	GATC	3 cut(s)	3, 358, 455
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	414
FaeI	CATG	6 cut(s)	230, 266, 316, 355, 382, 387
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	6 cut(s)	226, 262, 312, 351, 378, 383
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	6 cut(s)	230, 266, 316, 355, 382, 387
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	4 cut(s)	57, 137, 308, 329
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	85, 501
HpyCH4III	ACNGT	2 cut(s)	37, 103
HpyCH4IV	ACGT	2 cut(s)	42, 394
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpySE526I	ACGT	2 cut(s)	42, 394
Hsp92II	CATG	6 cut(s)	230, 266, 316, 355, 382, 387
Kzo9I	GATC	3 cut(s)	3, 358, 455
LmnI	GCTCC	2 cut(s)	49, 449
LpnPI	CCDG	6 cut(s)	342, 387, 423, 423, 436, 534
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	187, 322
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	2 cut(s)	42, 394
MaeIII	GTNAC	2 cut(s)	83, 386
MalI	GATC	3 cut(s)	5, 360, 457
MboI	GATC	3 cut(s)	3, 358, 455
MboII	GAAGA	3 cut(s)	242, 278, 368
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	3 cut(s)	69, 340, 532
MnlI	CCTC	4 cut(s)	13, 40, 315, 439
MseI	TTAA	3 cut(s)	98, 363, 467
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	3 cut(s)	3, 358, 455
NlaIII	CATG	6 cut(s)	230, 266, 316, 355, 382, 387
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	2 cut(s)	83, 386
NspI	RCATGY	2 cut(s)	316, 382
PciI	ACATGT	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	43
PscI	ACATGT	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	98, 363, 467
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	3 cut(s)	3, 358, 455
Sau96I	GGNCC	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	9 cut(s)	24, 45, 136, 289, 397, 412, 431, 442, 446
SfaNI	GCATC	2 cut(s)	187, 322
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	306, 527
SmoI	CTYRAG	2 cut(s)	306, 527
Sse9I	AATT	3 cut(s)	69, 340, 532
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	37, 103
TaiI	ACGT	2 cut(s)	45, 397
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	69, 340, 532
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	98, 363, 467
Tru9I	TTAA	3 cut(s)	98, 363, 467
TseFI	GTSAC	2 cut(s)	83, 386
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	83, 386
TspDTI	ATGAA	3 cut(s)	123, 243, 279
VpaK11BI	GGWCC	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	414
XceI	RCATGY	2 cut(s)	316, 382
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.