Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8226445.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8226445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

atgcggaagaagaagaagtgaatggtcaagtgggtgccatagacttccaatttgtggatgatattggatcatcagactactactctccttctcctttcgagattgctgaagagatagaagaggcagtggagccggagacctatgcagatgagccttctatgctaagagcagccatgaagagaatgaaatatgagaggaaattctctgcttctctctatgccttcaatggcatacccgaatgcttaaagttaaagattggatcttcgacaacaggaaacacgagaatgaggggaatatctgacctgcagagggcctgcagtaataagaacaaagaggaagctccagccaaacaagaatatgaaggaaagaaagaagaggagaaccagcagagatcaactgatatggggtcttcttcttcctcttcttctttttcttctctgagtgctgtgaatggtgatggtgagttgtcactttggagctcacttgatcttcagcctatctgctttttgtctactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

172

Amino Acids

18.99

Weight (kDa)

4.43

Isoelectric Point (pI)

69.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	75, 267
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	2 cut(s)	128, 475
AfiI	CCNNNNNNNGG	2 cut(s)	54, 309
AgsI	TTSAA	1 cut(s)	225
AluBI	AGCT	2 cut(s)	340, 479
AluI	AGCT	2 cut(s)	340, 479
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	75, 267
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	466, 472
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	2 cut(s)	304, 315
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	2 cut(s)	36, 131
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 309
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	54, 309
BseMII	CTCAG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	54, 309
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	67, 259, 391, 486
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	36, 131
BspMAI	CTGCAG	2 cut(s)	308, 319
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	75, 267
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	130
BssMI	GATC	4 cut(s)	67, 259, 391, 486
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst6I	CTCTTC	5 cut(s)	104, 113, 172, 368, 426
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	163, 439
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	70, 262, 394, 489
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	67, 259, 391, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSFI	CTRYAG	2 cut(s)	304, 315
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	311
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	8 cut(s)	132, 153, 172, 313, 340, 346, 479, 495
CviKI_1	RGCY	8 cut(s)	132, 153, 172, 313, 340, 346, 479, 495
DdeI	CTNAG	2 cut(s)	163, 439
DpnI	GATC	4 cut(s)	69, 261, 393, 488
DpnII	GATC	4 cut(s)	67, 259, 391, 486
Eam1104I	CTCTTC	5 cut(s)	104, 113, 172, 368, 426
EarI	CTCTTC	5 cut(s)	104, 113, 172, 368, 426
Ecl136II	GAGCTC	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	128, 475
EcoICRI	GAGCTC	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	481
FaeI	CATG	1 cut(s)	177
FaiI	YATR	9 cut(s)	40, 143, 160, 175, 191, 218, 232, 359, 403
FatI	CATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	1 cut(s)	177
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	466, 472
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	3 cut(s)	75, 300, 440
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	4 cut(s)	98, 164, 231, 355
HpyCH4V	TGCA	3 cut(s)	145, 306, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	2 cut(s)	163, 439
Hsp92II	CATG	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	67, 259, 391, 486
LmnI	GCTCC	3 cut(s)	129, 345, 476
LpnPI	CCDG	6 cut(s)	146, 257, 316, 327, 356, 397
Lsp1109I	GCAGC	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	4 cut(s)	69, 261, 393, 488
MboI	GATC	4 cut(s)	67, 259, 391, 486
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	3 cut(s)	49, 199, 516
MnlI	CCTC	7 cut(s)	114, 188, 281, 302, 327, 369, 429
MseI	TTAA	2 cut(s)	244, 250
MslI	CAYNNNNRTG	1 cut(s)	283
MspI	CCGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	4 cut(s)	67, 259, 391, 486
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	36, 131
NmuCI	GTSAC	1 cut(s)	467
PctI	GAATGC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	36, 131
PspPI	GGNCC	1 cut(s)	311
PstI	CTGCAG	2 cut(s)	308, 319
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	244, 250
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	67, 259, 391, 486
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	4 cut(s)	142, 305, 342, 481
SfcI	CTRYAG	2 cut(s)	304, 315
SmiMI	CAYNNNNRTG	1 cut(s)	283
Sse9I	AATT	3 cut(s)	49, 199, 516
SsiI	CCGC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	481
TaqI	TCGA	2 cut(s)	98, 265
TasI	AATT	3 cut(s)	49, 199, 516
Tru1I	TTAA	2 cut(s)	244, 250
Tru9I	TTAA	2 cut(s)	244, 250
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	3 cut(s)	190, 199, 374
TspRI	CASTG	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.