Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234057.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

249 .. 574

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgagacgatcagtgatattccttctcctattttctcccttgattggctgtttcgtcaaggctggttcagtcgaggagacctccctcgccaacccagattctgccggcggtgctcttcagctgttcagctatcttctgcctcctgcacttagggatgatggagcgcttttggtcacattggatggcaaggtagtttctgtcaaccccaagacgatggagattgagtgggccttgtcctctggctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

82

Amino Acids

8.68

Weight (kDa)

4.77

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	101
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	121, 129
AluI	AGCT	2 cut(s)	121, 129
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	115
BccI	CCATC	3 cut(s)	152, 176, 208
BcoDI	GTCTC	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	104
BseGI	GGATG	2 cut(s)	160, 187
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	160, 187
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	160, 187
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	228
CviJI	RGCY	6 cut(s)	48, 62, 121, 129, 230, 243
CviKI_1	RGCY	6 cut(s)	48, 62, 121, 129, 230, 243
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	71
Eco47III	AGCGCT	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	101
FokI	GGATG	2 cut(s)	167, 194
GlaI	GCGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	8
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	161, 248
LpnPI	CCDG	5 cut(s)	48, 108, 118, 156, 225
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	107, 125
MhlI	GDGCHC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	67, 91, 95, 150, 247
MroNI	GCCGGC	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	1 cut(s)	8
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	83, 123, 131, 192
SsiI	CCGC	1 cut(s)	108
TaqI	TCGA	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.