Rmu_co8241195.1_g000001

Protein TRANSPORT INHIBITOR RESPONSE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8241195.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 685
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8241195.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atggtcaagttgttttcatttactttgatttgtggaaagaatttgcgggagttggacttgcatgagagtgatgtggaggacctgagtgggcattggctgagccattttcctgatacctacacatcacttgtctcccttaacattgcatgcttgggctctgaggttagtttctctgccctggagcgcctggtgggtaggtgtcccaacctgaggagtctcaggctcaaccgtgcagtgccccttgacaggctatctaatcttcttaaccgtgcgcctcagctggttgagttggggacaggggcctactcagctgaattgcggtctgatgtgttgtcaaacttatcaagtgccctctcggcctgcaaggaactcaagagcctttctgggttttgggatgtggtcccaacttatcttccagctgtgtattctatctgccctgggataacatcactgaatttgagctacgccattattcaaagtcctgaccttatcaagcttgtcagtcaatgtccaaatttgcagcgcctttgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.55

Weight (kDa)

6.28

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 319
AcsI RAATTY 3 cut(s) 40, 454, 514
AfiI CCNNNNNNNGG 2 cut(s) 210, 246
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 3 cut(s) 177, 186, 436
AluBI AGCT 5 cut(s) 280, 311, 419, 462, 496
AluI AGCT 5 cut(s) 280, 311, 419, 462, 496
Alw26I GTCTC 2 cut(s) 136, 221
AoxI GGCC 2 cut(s) 300, 357
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 3 cut(s) 40, 454, 514
AspLEI GCGC 3 cut(s) 186, 274, 525
AspS9I GGNCC 3 cut(s) 79, 300, 400
AvaII GGWCC 2 cut(s) 79, 400
AxyI CCTNAGG 1 cut(s) 209
BaeGI GKGCMC 2 cut(s) 240, 352
BanII GRGCYC 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 276
BciT130I CCWGG 3 cut(s) 179, 188, 438
BcoDI GTCTC 2 cut(s) 136, 221
BfoI RGCGCY 2 cut(s) 187, 526
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 1 cut(s) 521
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 3 cut(s) 179, 188, 438
Bme18I GGWCC 2 cut(s) 79, 400
BmgT120I GGNCC 3 cut(s) 79, 300, 400
BmiI GGNNCC 2 cut(s) 301, 402
BmrFI CCNGG 3 cut(s) 179, 188, 438
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 177, 436, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 246
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 3 cut(s) 179, 188, 438
BseDI CCNNGG 3 cut(s) 177, 436, 437
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 210, 246
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 7 cut(s) 74, 89, 150, 200, 232, 290, 321
BseRI GAGGAG 1 cut(s) 226
BseSI GKGCMC 2 cut(s) 240, 352
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 2 cut(s) 302, 359
BslFI GGGAC 3 cut(s) 186, 307, 386
BslI CCNNNNNNNGG 2 cut(s) 210, 246
BsmAI GTCTC 2 cut(s) 136, 221
BsmFI GGGAC 3 cut(s) 186, 307, 386
BsnI GGCC 2 cut(s) 302, 359
Bsp1286I GDGCHC 3 cut(s) 158, 240, 352
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 2 cut(s) 46, 319
BspANI GGCC 2 cut(s) 302, 359
BspCNI CTCAG 7 cut(s) 75, 90, 151, 201, 231, 289, 320
BspLI GGNNCC 2 cut(s) 301, 402
BsrDI GCAATG 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 177, 436, 437
Bst2UI CCWGG 3 cut(s) 179, 188, 438
Bst4CI ACNGT 2 cut(s) 230, 269
BstC8I GCNNGC 2 cut(s) 148, 361
BstDEI CTNAG 7 cut(s) 83, 98, 159, 209, 218, 276, 307
BstF5I GGATG 1 cut(s) 400
BstH2I RGCGCY 2 cut(s) 187, 526
BstHHI GCGC 3 cut(s) 186, 274, 525
BstMAI GTCTC 2 cut(s) 136, 221
BstMWI GCNNNNNNNGC 2 cut(s) 308, 356
BstNI CCWGG 3 cut(s) 179, 188, 438
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 3 cut(s) 177, 186, 436
BstSLI GKGCMC 2 cut(s) 240, 352
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 2 cut(s) 302, 359
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 240, 449
Cac8I GCNNGC 2 cut(s) 148, 361
CfoI GCGC 3 cut(s) 186, 274, 525
Cfr13I GGNCC 3 cut(s) 79, 300, 400
CviAII CATG 2 cut(s) 62, 147
DdeI CTNAG 7 cut(s) 83, 98, 159, 209, 218, 276, 307
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 79, 400
Eco81I CCTNAGG 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 79, 300
EcoRII CCWGG 3 cut(s) 177, 186, 436
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 2 cut(s) 65, 150
FaiI YATR 2 cut(s) 63, 148
FaqI GGGAC 3 cut(s) 186, 307, 386
FatI CATG 2 cut(s) 61, 146
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 521
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 521
GlaI GCGC 3 cut(s) 185, 273, 524
GluI GCNGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 2 cut(s) 187, 526
HaeIII GGCC 2 cut(s) 302, 359
HhaI GCGC 3 cut(s) 186, 274, 525
Hin1II CATG 2 cut(s) 65, 150
Hin6I GCGC 3 cut(s) 184, 272, 523
HinP1I GCGC 3 cut(s) 184, 272, 523
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 160, 325
Hpy188III TCNNGA 3 cut(s) 110, 373, 482
HpyCH4III ACNGT 2 cut(s) 230, 269
HpyCH4V TGCA 5 cut(s) 61, 146, 233, 363, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 356
HpyF3I CTNAG 7 cut(s) 83, 98, 159, 209, 218, 276, 307
Hsp92II CATG 2 cut(s) 65, 150
HspAI GCGC 3 cut(s) 184, 272, 523
LmnI GCTCC 1 cut(s) 181
MboII GAAGA 2 cut(s) 251, 404
MhlI GDGCHC 3 cut(s) 158, 240, 352
MluCI AATT 4 cut(s) 40, 314, 454, 514
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 70, 154, 204, 285, 362
MseI TTAA 2 cut(s) 138, 264
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 3 cut(s) 280, 311, 419
MspR9I CCNGG 3 cut(s) 179, 188, 438
MvaI CCWGG 3 cut(s) 179, 188, 438
MwoI GCNNNNNNNGC 2 cut(s) 308, 356
NlaIII CATG 2 cut(s) 65, 150
NlaIV GGNNCC 2 cut(s) 301, 402
NmeAIII GCCGAG 1 cut(s) 335
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PasI CCCWGGG 1 cut(s) 437
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 177, 186, 436
PspGI CCWGG 3 cut(s) 177, 186, 436
PspN4I GGNNCC 2 cut(s) 301, 402
PspPI GGNCC 3 cut(s) 79, 300, 400
PspPPI RGGWCCY 1 cut(s) 79
PvuII CAGCTG 3 cut(s) 280, 311, 419
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 138, 264
SatI GCNGC 1 cut(s) 521
Sau96I GGNCC 3 cut(s) 79, 300, 400
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 179, 188, 438
SduI GDGCHC 3 cut(s) 158, 240, 352
SinI GGWCC 2 cut(s) 79, 400
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SphI GCATGC 1 cut(s) 150
Sse9I AATT 4 cut(s) 40, 314, 454, 514
SsiI CCGC 2 cut(s) 46, 319
StyD4I CCNGG 3 cut(s) 177, 186, 436
TaaI ACNGT 2 cut(s) 230, 269
TasI AATT 4 cut(s) 40, 314, 454, 514
Tru1I TTAA 2 cut(s) 138, 264
Tru9I TTAA 2 cut(s) 138, 264
TscAI CASTG 2 cut(s) 240, 456
TseI GCWGC 1 cut(s) 520
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 240, 456
VpaK11BI GGWCC 2 cut(s) 79, 400
XapI RAATTY 3 cut(s) 40, 454, 514
XceI RCATGY 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.