Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243853.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5 .. 652

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggctgagcaacttggtctttcaaatgatgatgtttgcgtaacagctgagttagttgatagcttgattatgaagcttgtacccagctggaaacctacatctgagagttcatcatgtggagcaaatagttcatgtggggatcagcgtgtacgtcaaaacgggtgcccttggggttccgctttggtcaaggctgcatcaatgatttcagatatctcagccgagtatggcaccactactgcctcagatgccactaaggtcaaaattctagaatcagacaagtacagttttgatgactgctatgaaggttcagatgggtacggttccagcccagattgtatgattcttggtcattttaagcagaagaattatgaggataattttggggattctctcgtgatgaatgactcagcaatgaactctactatctggagccctaatagatcaaaaacttatagcttatcaagcatttgttcattgtttgagttgtctctaatggagaaacatccagacgatgggttaaaagtggagctggattcaattgatctgcagtttcatcaccgttttcttgtgctcttgaagatgaaggaagaggcagtacaaagtgcaaagaagaagtggatagcaaagaagaaaatgggtgtcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048518 GO:0048573 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

215

Amino Acids

23.67

Weight (kDa)

5.13

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	162, 227
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	5 cut(s)	81, 150, 281, 317, 597
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	24, 537, 577
AluBI	AGCT	6 cut(s)	47, 63, 76, 87, 456, 529
AluI	AGCT	6 cut(s)	47, 63, 76, 87, 456, 529
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	2 cut(s)	162, 227
BanII	GRGCYC	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	305, 506
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	545
BisI	GCNGC	1 cut(s)	192
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	193
BmiI	GGNNCC	5 cut(s)	164, 175, 229, 322, 431
BmsI	GCATC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	448
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	5 cut(s)	39, 93, 228, 255, 420
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	83
BshNI	GGYRCC	2 cut(s)	162, 227
BsiHKAI	GWGCWC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	167, 434, 573
Bsp143I	GATC	3 cut(s)	139, 440, 541
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	5 cut(s)	40, 94, 227, 254, 419
BspLI	GGNNCC	5 cut(s)	164, 175, 229, 322, 431
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	1 cut(s)	147
BspT107I	GGYRCC	2 cut(s)	162, 227
BsrDI	GCAATG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	3 cut(s)	139, 440, 541
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	3 cut(s)	284, 320, 560
Bst6I	CTCTTC	1 cut(s)	582
BstDEI	CTNAG	7 cut(s)	6, 48, 102, 214, 241, 252, 406
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	3 cut(s)	142, 443, 544
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	139, 440, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 462
BstSFI	CTRYAG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	502
Csp6I	GTAC	5 cut(s)	80, 149, 280, 316, 596
CviAII	CATG	2 cut(s)	114, 132
CviQI	GTAC	5 cut(s)	80, 149, 280, 316, 596
DdeI	CTNAG	7 cut(s)	6, 48, 102, 214, 241, 252, 406
DpnI	GATC	3 cut(s)	141, 442, 543
DpnII	GATC	3 cut(s)	139, 440, 541
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	2 cut(s)	117, 135
FaiI	YATR	8 cut(s)	71, 115, 133, 225, 300, 338, 369, 453
FatI	CATG	2 cut(s)	113, 131
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	489
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	448
Hin1II	CATG	2 cut(s)	117, 135
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	5 cut(s)	269, 340, 386, 404, 533
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	149, 643
Hpy188I	TCNGA	5 cut(s)	103, 208, 244, 274, 310
Hpy188III	TCNNGA	5 cut(s)	266, 394, 427, 506, 574
Hpy8I	GTNNAC	2 cut(s)	149, 643
HpyAV	CCTTC	2 cut(s)	296, 577
HpyCH4III	ACNGT	3 cut(s)	284, 320, 560
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	194, 547, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 462
HpyF3I	CTNAG	7 cut(s)	6, 48, 102, 214, 241, 252, 406
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	117, 135
Kzo9I	GATC	3 cut(s)	139, 440, 541
LmnI	GCTCC	3 cut(s)	119, 429, 526
LpnPI	CCDG	7 cut(s)	73, 97, 337, 342, 412, 515, 519
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	203, 235
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	141, 442, 543
MboI	GATC	3 cut(s)	139, 440, 541
MboII	GAAGA	5 cut(s)	373, 589, 599, 622, 640
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	3 cut(s)	167, 434, 573
MluCI	AATT	4 cut(s)	261, 364, 376, 537
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	3 cut(s)	250, 364, 583
MseI	TTAA	2 cut(s)	354, 518
MspA1I	CMGCKG	2 cut(s)	47, 87
MunI	CAATTG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	245, 462
NdeII	GATC	3 cut(s)	139, 440, 541
NlaIII	CATG	2 cut(s)	117, 135
NlaIV	GGNNCC	5 cut(s)	164, 175, 229, 322, 431
NmeAIII	GCCGAG	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	269, 340, 386, 533
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	5 cut(s)	164, 175, 229, 322, 431
PstI	CTGCAG	1 cut(s)	549
PvuII	CAGCTG	2 cut(s)	47, 87
RsaI	GTAC	5 cut(s)	81, 150, 281, 317, 597
RsaNI	GTAC	5 cut(s)	80, 149, 280, 316, 596
SaqAI	TTAA	2 cut(s)	354, 518
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	139, 440, 541
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	167, 434, 573
SfaNI	GCATC	2 cut(s)	203, 235
SfcI	CTRYAG	1 cut(s)	545
Sse9I	AATT	4 cut(s)	261, 364, 376, 537
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	284, 320, 560
TaiI	ACGT	1 cut(s)	154
TasI	AATT	4 cut(s)	261, 364, 376, 537
TatI	WGTACW	2 cut(s)	279, 595
TfiI	GAWTC	4 cut(s)	269, 340, 386, 533
Tru1I	TTAA	2 cut(s)	354, 518
Tru9I	TTAA	2 cut(s)	354, 518
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	9 cut(s)	86, 99, 120, 315, 413, 428, 462, 542, 596
Van91I	CCANNNNNTGG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	261
XbaI	TCTAGA	1 cut(s)	265
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.