Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8261441.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 639

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8261441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

atggatcaagaagaacgtcagcgcggcggagacgacgccgtttctgtgccgagtttcaatttccagcgcctcaaagtcatctcgccgctcggccgcggagccaagggcgtcgtgtttttggtgaaagaccaagagacggaggagctcatggccttgaaggtaatttccaaggacttgatccaccgcaaggggaaggatggcggcgacggcgacgagtaccgccgagtctgcttcgagcagcaagtactacgtcgttttgatcacccgctcctcccgaaactgcatggagtcctcgacactgagaagctcgtcggttacgccataaattactgccccggccgcgatctcaattccctccggaagaggcagacggagaggatgttctccgatgacgtcatcaggttttacgcggcggaattggttctggcattggagtatttgcacggtttaggagtggtttaccgggatttgaagccggaaaacgttatgatccaagaaaacggccacattatgctcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

172

Amino Acids

19.73

Weight (kDa)

6.53

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccBSI	CCGCTC	2 cut(s)	88, 268
AccII	CGCG	4 cut(s)	24, 96, 342, 410
AccIII	TCCGGA	1 cut(s)	357
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	3 cut(s)	12, 172, 484
AcoI	YGGCCR	3 cut(s)	91, 337, 502
AcyI	GRCGYC	3 cut(s)	36, 108, 393
AfaI	GTAC	2 cut(s)	218, 246
AfiI	CCNNNNNNNGG	2 cut(s)	136, 187
AgsI	TTSAA	3 cut(s)	58, 157, 472
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	2 cut(s)	145, 307
AluI	AGCT	2 cut(s)	145, 307
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	24, 128
AlwI	GGATC	3 cut(s)	12, 172, 484
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	91, 150, 337, 502
ApeKI	GCWGC	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	24, 69
AsuC2I	CCSGG	2 cut(s)	336, 464
AsuHPI	GGTGA	2 cut(s)	133, 254
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	23, 223
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	336, 464
BcoDI	GTCTC	2 cut(s)	24, 128
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	7 cut(s)	25, 86, 94, 202, 239, 340, 411
BlsI	GCNGC	7 cut(s)	26, 87, 95, 203, 240, 341, 412
BmcAI	AGTACT	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	336, 464
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	336, 464
BpuMI	CCSGG	2 cut(s)	336, 464
BsaHI	GRCGYC	3 cut(s)	36, 108, 393
BsaJI	CCNNGG	4 cut(s)	94, 102, 168, 334
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 187
BseAI	TCCGGA	1 cut(s)	357
BseDI	CCNNGG	4 cut(s)	94, 102, 168, 334
BseGI	GGATG	2 cut(s)	202, 384
BseLI	CCNNNNNNNGG	2 cut(s)	136, 187
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	155, 260
BseX3I	CGGCCG	2 cut(s)	91, 337
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	4 cut(s)	24, 96, 342, 410
Bsh1285I	CGRYCG	2 cut(s)	94, 340
BshFI	GGCC	4 cut(s)	93, 152, 339, 504
BsiEI	CGRYCG	2 cut(s)	94, 340
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	336, 358, 463, 476
BslI	CCNNNNNNNGG	2 cut(s)	136, 187
BsmAI	GTCTC	2 cut(s)	24, 128
BsmBI	CGTCTC	2 cut(s)	24, 128
BsnI	GGCC	4 cut(s)	93, 152, 339, 504
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	4, 177, 259, 343, 489
BspANI	GGCC	4 cut(s)	93, 152, 339, 504
BspCNI	CTCAG	1 cut(s)	292
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	4 cut(s)	24, 96, 342, 410
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	12, 172, 484
BsrBI	CCGCTC	2 cut(s)	88, 268
BssECI	CCNNGG	4 cut(s)	94, 102, 168, 334
BssMI	GATC	5 cut(s)	4, 177, 259, 343, 489
BssNI	GRCGYC	3 cut(s)	36, 108, 393
BssT1I	CCWWGG	2 cut(s)	102, 168
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	3 cut(s)	36, 108, 393
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	202, 384
BstFNI	CGCG	4 cut(s)	24, 96, 342, 410
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	24, 69
BstKTI	GATC	5 cut(s)	7, 180, 262, 346, 492
BstMAI	GTCTC	2 cut(s)	24, 128
BstMBI	GATC	5 cut(s)	4, 177, 259, 343, 489
BstMCI	CGRYCG	2 cut(s)	94, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 228, 339
BstSCI	CCNGG	2 cut(s)	334, 462
BstUI	CGCG	4 cut(s)	24, 96, 342, 410
BstV1I	GCAGC	1 cut(s)	250
BstZI	CGGCCG	2 cut(s)	91, 337
BsuRI	GGCC	4 cut(s)	93, 152, 339, 504
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	202, 384
BtsIMutI	CAGTG	1 cut(s)	297
CfoI	GCGC	2 cut(s)	24, 69
Cfr42I	CCGCGG	1 cut(s)	97
CseI	GACGC	2 cut(s)	44, 97
Csp6I	GTAC	2 cut(s)	217, 245
CviAII	CATG	2 cut(s)	148, 284
CviJI	RGCY	8 cut(s)	93, 101, 145, 152, 307, 339, 475, 504
CviKI_1	RGCY	8 cut(s)	93, 101, 145, 152, 307, 339, 475, 504
CviQI	GTAC	2 cut(s)	217, 245
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	5 cut(s)	6, 179, 261, 345, 491
DpnII	GATC	5 cut(s)	4, 177, 259, 343, 489
EaeI	YGGCCR	3 cut(s)	91, 337, 502
EagI	CGGCCG	2 cut(s)	91, 337
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	2 cut(s)	42, 428
Ecl136II	GAGCTC	1 cut(s)	145
EclXI	CGGCCG	2 cut(s)	91, 337
Eco130I	CCWWGG	2 cut(s)	102, 168
Eco24I	GRGCYC	1 cut(s)	147
Eco52I	CGGCCG	2 cut(s)	91, 337
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	102, 168
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	102, 168
Esp3I	CGTCTC	2 cut(s)	24, 128
FaeI	CATG	2 cut(s)	151, 287
FaiI	YATR	5 cut(s)	149, 285, 323, 488, 512
FatI	CATG	2 cut(s)	147, 283
FauI	CCCGC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	25, 86, 94, 202, 239, 340, 411
FokI	GGATG	2 cut(s)	209, 391
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	7 cut(s)	25, 86, 94, 202, 239, 340, 411
GlaI	GCGC	2 cut(s)	23, 68
GluI	GCNGC	7 cut(s)	25, 86, 94, 202, 239, 340, 411
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	93, 152, 339, 504
HapII	CCGG	4 cut(s)	336, 358, 463, 476
HgaI	GACGC	2 cut(s)	44, 97
HhaI	GCGC	2 cut(s)	24, 69
Hin1I	GRCGYC	3 cut(s)	36, 108, 393
Hin1II	CATG	2 cut(s)	151, 287
Hin6I	GCGC	2 cut(s)	22, 67
HinP1I	GCGC	2 cut(s)	22, 67
HinfI	GANTC	2 cut(s)	225, 288
HpaII	CCGG	4 cut(s)	336, 358, 463, 476
HphI	GGTGA	2 cut(s)	133, 254
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	8, 274, 358
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	6 cut(s)	38, 113, 209, 215, 255, 314
HpyAV	CCTTC	2 cut(s)	151, 187
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	4 cut(s)	16, 250, 393, 483
HpyCH4V	TGCA	2 cut(s)	283, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 228, 339
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	4 cut(s)	16, 250, 393, 483
Hsp92I	GRCGYC	3 cut(s)	36, 108, 393
Hsp92II	CATG	2 cut(s)	151, 287
HspAI	GCGC	2 cut(s)	22, 67
Kpn2I	TCCGGA	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	259
KspI	CCGCGG	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	4, 177, 259, 343, 489
LmnI	GCTCC	3 cut(s)	98, 142, 273
LpnPI	CCDG	7 cut(s)	77, 349, 371, 385, 410, 476, 489
Lsp1109I	GCAGC	1 cut(s)	250
MaeII	ACGT	4 cut(s)	16, 250, 393, 483
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	5 cut(s)	6, 179, 261, 345, 491
MbiI	CCGCTC	2 cut(s)	88, 268
MboI	GATC	5 cut(s)	4, 177, 259, 343, 489
MboII	GAAGA	2 cut(s)	23, 373
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	5 cut(s)	58, 162, 325, 349, 416
MlyI	GAGTC	2 cut(s)	234, 297
MnlI	CCTC	7 cut(s)	80, 133, 281, 302, 357, 365, 369
MroI	TCCGGA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	4 cut(s)	336, 358, 463, 476
MspR9I	CCNGG	2 cut(s)	336, 464
MvnI	CGCG	4 cut(s)	24, 96, 342, 410
MwoI	GCNNNNNNNGC	3 cut(s)	207, 228, 339
NciI	CCSGG	2 cut(s)	336, 464
NdeII	GATC	5 cut(s)	4, 177, 259, 343, 489
NlaIII	CATG	2 cut(s)	151, 287
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	3 cut(s)	69, 75, 248
PdmI	GAANNNNTTC	1 cut(s)	420
PkrI	GCNGC	7 cut(s)	26, 87, 95, 203, 240, 341, 412
PleI	GAGTC	2 cut(s)	233, 296
PpsI	GAGTC	2 cut(s)	233, 296
Psp124BI	GAGCTC	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	100
RsaI	GTAC	2 cut(s)	218, 246
RsaNI	GTAC	2 cut(s)	217, 245
SacI	GAGCTC	1 cut(s)	147
SacII	CCGCGG	1 cut(s)	97
SatI	GCNGC	7 cut(s)	25, 86, 94, 202, 239, 340, 411
Sau3AI	GATC	5 cut(s)	4, 177, 259, 343, 489
ScaI	AGTACT	1 cut(s)	246
SchI	GAGTC	2 cut(s)	234, 297
ScrFI	CCNGG	2 cut(s)	336, 464
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	8 cut(s)	19, 147, 162, 253, 309, 396, 404, 486
Sfr303I	CCGCGG	1 cut(s)	97
SgrBI	CCGCGG	1 cut(s)	97
Sse9I	AATT	5 cut(s)	58, 162, 325, 349, 416
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	334, 462
StyI	CCWWGG	2 cut(s)	102, 168
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	4 cut(s)	19, 253, 396, 486
TaqI	TCGA	2 cut(s)	234, 294
TasI	AATT	5 cut(s)	58, 162, 325, 349, 416
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	6 cut(s)	27, 88, 96, 204, 342, 413
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	238
TspGWI	ACGGA	2 cut(s)	152, 386
TspRI	CASTG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	394
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.