Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264965.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

36 .. 816

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggatttgaaaacgacgccgttgcggttcactctgggcaagcagtcgtctctggcgccggagcgtgaatccgacgccggagacgcggaggaggacgaggtggaggtgatcgatccccgagtgaggctcatgtacttggccaatgaagccgacttggacgggatcaaggagcttctcgattccggcatcgacgtcaatttccgcgacatcgataatcggacggcgctgcatgtcgccgcgtgtcagggctactccgacgtcgtttcgctgctgcttgagcgcggagctgatgttaatactaaagatcgctggggcagctcccctcttgcagatgctatatactataagaaacatgatgtgatcaagcttctggagaagcgcggcgcgaagcctctgatggcaccaatgcgcgttaagtatgcgagagaagttcccgaatatgaaattgatcccaaggagcttgattttactaacagtgttgaaataaccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 Pkinase_Tyr

Protein Analysis

164

Amino Acids

18.47

Weight (kDa)

4.75

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	195, 261
AccB1I	GGYRCC	2 cut(s)	55, 400
AccII	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
AciI	CCGC	6 cut(s)	25, 86, 202, 237, 282, 381
AclWI	GGATC	3 cut(s)	107, 170, 443
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	10, 482
AluBI	AGCT	5 cut(s)	172, 287, 318, 367, 460
AluI	AGCT	5 cut(s)	172, 287, 318, 367, 460
Alw26I	GTCTC	2 cut(s)	54, 75
AlwI	GGATC	3 cut(s)	107, 170, 443
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	4 cut(s)	226, 268, 271, 315
AspLEI	GCGC	6 cut(s)	58, 226, 282, 381, 386, 411
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	55, 400
BbvI	GCAGC	4 cut(s)	213, 255, 258, 327
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	2 cut(s)	4, 237
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	54, 75
BfoI	RGCGCY	2 cut(s)	59, 227
BisI	GCNGC	6 cut(s)	227, 237, 269, 272, 316, 382
BlsI	GCNGC	6 cut(s)	228, 238, 270, 273, 317, 383
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	57, 402
BmsI	GCATC	2 cut(s)	195, 322
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	296
Bsa29I	ATCGAT	2 cut(s)	111, 210
BsaHI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseCI	ATCGAT	2 cut(s)	111, 210
BseDI	CCNNGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	213, 255, 258, 327
BseYI	CCCAGC	1 cut(s)	309
Bsh1236I	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	2 cut(s)	55, 400
BshVI	ATCGAT	2 cut(s)	111, 210
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	59, 78, 183
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	54, 75
BsmBI	CGTCTC	2 cut(s)	54, 75
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
BspACI	CCGC	6 cut(s)	25, 86, 202, 237, 282, 381
BspANI	GGCC	1 cut(s)	140
BspDI	ATCGAT	2 cut(s)	111, 210
BspFNI	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
BspLI	GGNNCC	2 cut(s)	57, 402
BspPI	GGATC	3 cut(s)	107, 170, 443
BspT107I	GGYRCC	2 cut(s)	55, 400
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
BssNI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	476
BstACI	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
BstC8I	GCNNGC	1 cut(s)	41
BstFNI	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
BstH2I	RGCGCY	2 cut(s)	59, 227
BstHHI	GCGC	6 cut(s)	58, 226, 282, 381, 386, 411
BstKTI	GATC	6 cut(s)	111, 115, 165, 307, 363, 451
BstMAI	GTCTC	2 cut(s)	54, 75
BstMBI	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 146, 277, 315
BstNSI	RCATGY	1 cut(s)	233
BstUI	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
BstV1I	GCAGC	4 cut(s)	213, 255, 258, 327
Bsu15I	ATCGAT	2 cut(s)	111, 210
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	2 cut(s)	111, 210
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	6 cut(s)	58, 226, 282, 381, 386, 411
ClaI	ATCGAT	2 cut(s)	111, 210
CseI	GACGC	3 cut(s)	25, 83, 92
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	130, 230, 353
CviQI	GTAC	1 cut(s)	133
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	6 cut(s)	110, 114, 164, 306, 362, 450
DpnII	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	2 cut(s)	54, 75
FaeI	CATG	3 cut(s)	133, 233, 356
FaiI	YATR	8 cut(s)	131, 231, 338, 340, 345, 354, 420, 441
FatI	CATG	3 cut(s)	129, 229, 352
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	6 cut(s)	227, 237, 269, 272, 316, 382
Fsp4HI	GCNGC	6 cut(s)	227, 237, 269, 272, 316, 382
GlaI	GCGC	6 cut(s)	57, 225, 281, 380, 385, 410
GluI	GCNGC	6 cut(s)	227, 237, 269, 272, 316, 382
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	2 cut(s)	59, 227
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	59, 78, 183
HgaI	GACGC	3 cut(s)	25, 83, 92
HhaI	GCGC	6 cut(s)	58, 226, 282, 381, 386, 411
Hin1I	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
Hin1II	CATG	3 cut(s)	133, 233, 356
Hin6I	GCGC	6 cut(s)	56, 224, 280, 379, 384, 409
HinP1I	GCGC	6 cut(s)	56, 224, 280, 379, 384, 409
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	2 cut(s)	68, 179
HpaII	CCGG	3 cut(s)	59, 78, 183
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	4 cut(s)	73, 219, 256, 396
Hpy188III	TCNNGA	3 cut(s)	176, 371, 434
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	5 cut(s)	19, 77, 194, 260, 263
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	2 cut(s)	192, 258
HpyCH4V	TGCA	2 cut(s)	229, 329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 146, 277, 315
HpySE526I	ACGT	2 cut(s)	192, 258
Hsp92I	GRCGYC	5 cut(s)	17, 56, 75, 192, 258
Hsp92II	CATG	3 cut(s)	133, 233, 356
HspAI	GCGC	6 cut(s)	56, 224, 280, 379, 384, 409
KasI	GGCGCC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
LmnI	GCTCC	5 cut(s)	61, 169, 284, 323, 457
LpnPI	CCDG	8 cut(s)	20, 38, 72, 91, 196, 230, 295, 356
Lsp1109I	GCAGC	4 cut(s)	213, 255, 258, 327
LweI	GCATC	2 cut(s)	195, 322
MaeII	ACGT	2 cut(s)	192, 258
MalI	GATC	6 cut(s)	110, 114, 164, 306, 362, 450
MboI	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	2 cut(s)	196, 444
MluNI	TGGCCA	1 cut(s)	140
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	96, 279
MnlI	CCTC	7 cut(s)	82, 85, 91, 97, 117, 333, 402
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	294, 414
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	3 cut(s)	59, 78, 183
MteI	GCGCNGCGC	1 cut(s)	382
MvnI	CGCG	7 cut(s)	86, 204, 239, 282, 381, 386, 411
MwoI	GCNNNNNNNGC	4 cut(s)	83, 146, 277, 315
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
NlaIII	CATG	3 cut(s)	133, 233, 356
NlaIV	GGNNCC	2 cut(s)	57, 402
NspI	RCATGY	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	68, 179
PkrI	GCNGC	6 cut(s)	228, 238, 270, 273, 317, 383
PluTI	GGCGCC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	57, 402
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	294, 414
SatI	GCNGC	6 cut(s)	227, 237, 269, 272, 316, 382
Sau3AI	GATC	6 cut(s)	108, 112, 162, 304, 360, 448
SetI	ASST	9 cut(s)	102, 108, 174, 195, 261, 289, 320, 369, 462
SfaNI	GCATC	2 cut(s)	195, 322
SfoI	GGCGCC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	196, 444
SsiI	CCGC	6 cut(s)	25, 86, 202, 237, 282, 381
SspDI	GGCGCC	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	2 cut(s)	195, 261
TaqI	TCGA	4 cut(s)	111, 177, 189, 210
TasI	AATT	2 cut(s)	196, 444
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	2 cut(s)	239, 384
TfiI	GAWTC	2 cut(s)	68, 179
Tru1I	TTAA	2 cut(s)	294, 414
Tru9I	TTAA	2 cut(s)	294, 414
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	4 cut(s)	226, 268, 271, 315
TspDTI	ATGAA	2 cut(s)	159, 456
TspRI	CASTG	1 cut(s)	481
XceI	RCATGY	1 cut(s)	233
ZraI	GACGTC	2 cut(s)	193, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.