Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266361.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

431 .. 819

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

atgaactccacaatccgcacttcttatctctctctttcccgcggccggaaaattcccaaaccggaatcgccgagcctccaactacctcctcgttccgtcaactcgccgaaccgttgcaacggtttccgaaacgtttcgtcggccaattcgctgctgagaattggactccggcatgactcggctgacctccgcggtgttcaatcgagacgagttagggtttcttccaagaacgctcagttcggctcgttctcggacgggaacgaagctcaggcgccgagcttcggggagtttattacatcggagagagtcaaagtggtggcgatgctcgctttggctctggctctgtgcaatgccgaccgtgttgtgatgtcggtggcgattgtgccctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Pkinase

Protein Analysis

129

Amino Acids

13.99

Weight (kDa)

11.28

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	2 cut(s)	42, 192
AciI	CCGC	5 cut(s)	16, 40, 42, 190, 192
AclI	AACGTT	1 cut(s)	132
AcoI	YGGCCR	2 cut(s)	43, 141
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	45, 281
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	2 cut(s)	266, 279
AluI	AGCT	2 cut(s)	266, 279
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	43, 141
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	275
BisI	GCNGC	2 cut(s)	43, 152
BlsI	GCNGC	2 cut(s)	44, 153
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	40, 190
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 281
Bse3DI	GCAATG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	40, 190
BseLI	CCNNNNNNNGG	2 cut(s)	45, 281
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	146, 248, 281
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	387
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	42, 192
Bsh1285I	CGRYCG	2 cut(s)	46, 358
BshFI	GGCC	2 cut(s)	45, 143
BshNI	GGYRCC	1 cut(s)	271
BsiEI	CGRYCG	2 cut(s)	46, 358
BsiSI	CCGG	3 cut(s)	46, 62, 169
BslI	CCNNNNNNNGG	2 cut(s)	45, 281
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	45, 143
Bsp1286I	GDGCHC	1 cut(s)	387
BspACI	CCGC	5 cut(s)	16, 40, 42, 190, 192
BspANI	GGCC	2 cut(s)	45, 143
BspCNI	CTCAG	3 cut(s)	147, 247, 280
BspFNI	CGCG	2 cut(s)	42, 192
BspLI	GGNNCC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	40, 190
BssNI	GRCGYC	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	113, 122, 359
BstACI	GRCGYC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	155, 234, 267
BstDSI	CCRYGG	2 cut(s)	40, 190
BstFNI	CGCG	2 cut(s)	42, 192
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	199
BstMCI	CGRYCG	2 cut(s)	46, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	2 cut(s)	42, 192
BstV1I	GCAGC	1 cut(s)	138
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	45, 143
BtgI	CCRYGG	2 cut(s)	40, 190
BtgZI	GCGATG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	274
Cfr42I	CCGCGG	2 cut(s)	43, 193
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	45, 75, 143, 182, 243, 266, 279, 335, 341
CviKI_1	RGCY	9 cut(s)	45, 75, 143, 182, 243, 266, 279, 335, 341
DdeI	CTNAG	3 cut(s)	155, 234, 267
DinI	GGCGCC	1 cut(s)	273
EaeI	YGGCCR	2 cut(s)	43, 141
EagI	CGGCCG	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	1 cut(s)	176
FaiI	YATR	1 cut(s)	174
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	43, 152
Fsp4HI	GCNGC	2 cut(s)	43, 152
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	43, 152
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	45, 143
HapII	CCGG	3 cut(s)	46, 62, 169
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	65, 165, 176, 306
HpaII	CCGG	3 cut(s)	46, 62, 169
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	128, 253, 301
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	113, 122, 359
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	117, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	3 cut(s)	155, 234, 267
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	272
KasI	GGCGCC	1 cut(s)	271
KspI	CCGCGG	2 cut(s)	43, 193
LpnPI	CCDG	5 cut(s)	59, 75, 182, 254, 323
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	132
MboII	GAAGA	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	3 cut(s)	51, 145, 159
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	3 cut(s)	159, 170, 315
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	86, 96, 99, 197
MroXI	GAANNNNTTC	1 cut(s)	133
MspA1I	CMGCKG	2 cut(s)	42, 192
MspI	CCGG	3 cut(s)	46, 62, 169
MvnI	CGCG	2 cut(s)	42, 192
MwoI	GCNNNNNNNGC	1 cut(s)	326
NarI	GGCGCC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	3 cut(s)	96, 158, 300
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	44, 153
PleI	GAGTC	3 cut(s)	159, 170, 314
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	3 cut(s)	159, 170, 314
Psp1406I	AACGTT	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	273
SacII	CCGCGG	2 cut(s)	43, 193
SatI	GCNGC	2 cut(s)	43, 152
SchI	GAGTC	3 cut(s)	159, 170, 315
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	5 cut(s)	88, 135, 189, 268, 281
SfaNI	GCATC	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	273
Sfr303I	CCGCGG	2 cut(s)	43, 193
SgrBI	CCGCGG	2 cut(s)	43, 193
Sse9I	AATT	3 cut(s)	51, 145, 159
SsiI	CCGC	5 cut(s)	16, 40, 42, 190, 192
SspDI	GGCGCC	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	113, 122, 359
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	51, 145, 159
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	85
XapI	RAATTY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.