Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270057.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 732

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270057.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

tatgcgttacctcaatttctggagagaacatccagattaaaggttctaataatcacaaagtatggtcgtgattctgctgagttgagtaattttcaactactgggtttgttaccaaatctgaagagaatcagattagagagtattttaactccttccataaccaagaacctcactcaactgaagagtcttgagaagataactttgtcctggtgcgacgatattgataaagctttcagcagctcttctatccaaattccacatgcatttccgaagctagtggaattaaacatcgacaattgcaacgatttagtgaaattgcctgccgaactctgtgatcttgtttctctaaagaaactcagtgttaccgagtgttataatctggttaccataccagaagcaattggaaagttggtcaaattagaattgctgaggctaagacgctgtacggagttgcaacagcttccagaatcgcttcacagcctcccagagttgaacttccttgacatagctgattgcgtcagcatgaagaagttgcctcagaacattggagcactgagtagtttagaaaagcttgacatgagaaaatgctctggactggaaaagcttccttcatcagttataaatcttcgtaagttacgggaagtgatatgcgatgaagagaaaaaaaagttatggggacgctatttggactttatggaaaacctaaggaaggtgggtccagtggagttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

243

Amino Acids

27.72

Weight (kDa)

8.71

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	375, 620
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	140, 200
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	709
AgsI	TTSAA	2 cut(s)	95, 493
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	7 cut(s)	230, 240, 274, 460, 509, 571, 604
AluI	AGCT	7 cut(s)	230, 240, 274, 460, 509, 571, 604
Alw21I	GWGCWC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	2 cut(s)	471, 603
AspS9I	GGNCC	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	553
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	208
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	105, 600, 719
Bse21I	CCTNAGG	1 cut(s)	704
BseBI	CCWGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	5 cut(s)	69, 370, 419, 545, 551
BseNI	ACTGG	3 cut(s)	105, 600, 719
BseXI	GCAGC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmFI	GGGAC	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	1 cut(s)	334
BspCNI	CTCAG	5 cut(s)	70, 369, 420, 546, 550
BspLI	GGNNCC	1 cut(s)	717
BspQI	GCTCTTC	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	105, 600, 719
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	4 cut(s)	116, 176, 247, 651
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	7 cut(s)	78, 356, 428, 434, 537, 554, 704
BstEII	GGTNACC	1 cut(s)	382
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	704
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	364, 551, 726
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	716
CseI	GACGC	3 cut(s)	447, 505, 687
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	3 cut(s)	260, 523, 577
CviJI	RGCY	9 cut(s)	230, 240, 274, 433, 460, 480, 509, 571, 604
CviKI_1	RGCY	9 cut(s)	230, 240, 274, 433, 460, 480, 509, 571, 604
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	7 cut(s)	78, 356, 428, 434, 537, 554, 704
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	4 cut(s)	116, 176, 247, 651
EarI	CTCTTC	4 cut(s)	116, 176, 247, 651
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	140, 200
Eco81I	CCTNAGG	1 cut(s)	704
Eco91I	GGTNACC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	3 cut(s)	263, 526, 580
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	3 cut(s)	259, 522, 576
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	41
HgaI	GACGC	3 cut(s)	447, 505, 687
Hin1II	CATG	3 cut(s)	263, 526, 580
HindIII	AAGCTT	3 cut(s)	228, 569, 602
HinfI	GANTC	4 cut(s)	71, 126, 184, 467
Hpy188I	TCNGA	4 cut(s)	120, 131, 270, 540
Hpy188III	TCNNGA	6 cut(s)	20, 33, 68, 188, 464, 591
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	162, 618, 703
HpyCH4V	TGCA	3 cut(s)	263, 300, 454
HpyF3I	CTNAG	7 cut(s)	78, 356, 428, 434, 537, 554, 704
Hsp92II	CATG	3 cut(s)	263, 526, 580
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	5 cut(s)	6, 108, 361, 382, 633
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	7 cut(s)	133, 193, 205, 234, 538, 617, 668
MfeI	CAATTG	2 cut(s)	295, 399
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	9 cut(s)	14, 88, 252, 281, 295, 314, 399, 416, 422
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	5 cut(s)	21, 179, 423, 491, 546
Mph1103I	ATGCAT	1 cut(s)	265
MroXI	GAANNNNTTC	2 cut(s)	471, 603
MseI	TTAA	3 cut(s)	38, 146, 284
MspR9I	CCNGG	1 cut(s)	208
MunI	CAATTG	2 cut(s)	295, 399
MvaI	CCWGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	263, 526, 580
NlaIV	GGNNCC	1 cut(s)	717
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	247
PdmI	GAANNNNTTC	2 cut(s)	471, 603
PfeI	GAWTC	3 cut(s)	71, 126, 467
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PsiI	TTATAA	2 cut(s)	375, 620
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	716
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	38, 146, 284
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	553
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	9 cut(s)	14, 88, 252, 281, 295, 314, 399, 416, 422
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	291
TasI	AATT	9 cut(s)	14, 88, 252, 281, 295, 314, 399, 416, 422
TfiI	GAWTC	3 cut(s)	71, 126, 467
Tru1I	TTAA	3 cut(s)	38, 146, 284
Tru9I	TTAA	3 cut(s)	38, 146, 284
TscAI	CASTG	3 cut(s)	364, 558, 726
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	539, 600, 669
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	3 cut(s)	364, 558, 726
VpaK11BI	GGWCC	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	471, 603
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.